Commit Graph

901 Commits

Author SHA1 Message Date
361257d9f4 STYLE: enumerate Nastran PLOADs in NASCore 2019-01-17 03:10:31 +01:00
c44814c100 ENH: use globalIndex gather in patch merging 2019-01-17 00:38:18 +01:00
2067014079 ENH: minor consistency improvements for bounding box
- a valid() method (same as !empty() call) for consistency with other
  containers and data types

- a centre() method (same as midpoint() method) for consistency with
  other OpenFOAM geometric entities
2019-01-09 09:32:23 +01:00
74d9dc3f50 BUG: polyMesh constructor AUTO_WRITE flag, ignored readOpt (#1147)
- fixed some more places with an explicit AUTO_WRITE.

BUG: revert handling of the readOption. It should not be NO_READ.

  In cases where the user a IOobject without specifying read/write, it
  defaults to NO_READ anyhow. However, the move constructor can also
  be called with empty lists and a read option. This has the same
  signature, but obviously will not work with NO_READ.
2019-01-07 22:23:19 +01:00
1d85fecf4d ENH: use Zero when zero-initializing types
- makes the intent clearer and avoids the need for additional
  constructor casting. Eg,

      labelList(10, Zero)    vs.  labelList(10, 0)
      scalarField(10, Zero)  vs.  scalarField(10, scalar(0))
      vectorField(10, Zero)  vs.  vectorField(10, vector::zero)
2018-12-11 23:50:15 +01:00
9231534efa STYLE: Updating version to v1812 2018-12-19 18:07:52 +00:00
9076f5b21b ENH: provide argList::envGlobalPath() static method
- this is identical to either of these solutions:

     * getEnv("FOAM_CASE")
     * stringOps::expand("<case>")

  but with a closer resemblance to argList or Time globalPath(),
  which makes the intent clearer.
  Avoids using raw strings in the caller, which improves compile-time checks.

  Used in situations where a class has no derivation path or other
  access to a time registry or command args.
2018-12-15 14:39:12 +01:00
455c8ef540 ENH: simplify use of case-relative paths
- provide relativePath() for argList and for Time.
  These are relative to the case globalPath().
  Eg,

     Info<< "output: " << runTime.relativePath(outputFile) << nl;
2018-12-15 13:26:55 +01:00
2f9c511be5 ENH: make "file" property in functionObjects a relative path (issue #1125)
- partial solution for issue #1091

  This generates file properties that are case-relative,
  Eg,

      plane0
      {
          p
          {
              file "<case>/postProcessing/plane0/1/p_plane0.vtk";
          }
          U
          {
              file "<case>/postProcessing/plane0/1/U_plane0.vtk";
          }
      }

   This allows the case to be moved elsewhere and still find its files.

   This functionality was previously added for vtkCloud, but now also
   applies to streamLine, sampledSets and sampledSurfaces
2018-12-14 18:03:12 +01:00
fc13c20cc8 ENH: sampledPatch: access to patchIDs. 2018-12-10 15:21:48 +00:00
c3b6c787a7 BUG: sampledSurface::originalIds not virtual 2018-12-12 10:52:11 +01:00
0b5f681fb9 DOC: Updated header documentation 2018-12-06 23:09:10 +00:00
7943603bf0 ENH: isoSurfaceTopo: replacement for isoSurfaceCell. 2018-12-06 15:56:26 +00:00
a199fef957 STYLE: use globalPath() instead of path()/".." for parallel 2018-12-05 22:54:50 +01:00
fc2f2e74d2 BUG: checkMesh, moveDynamicMesh checks not in postProcessing/ (fixes #1104)
- now placed under postProcessing/checkMesh and postProcessing/checkAMI,
  respectively.

  Output files are now also tagged with the id of the patch, in case
  there are multiple AMI patches in use.
2018-12-05 22:03:28 +01:00
f4ae4f7b2c ENH: snappyHexMesh. Added leak-path detection.
Detects connections (during refinement) between
locationsInsideMesh and locationsOutsideMesh and
writes a sampledSet for postprocessing.
2018-08-02 16:39:06 +01:00
b9b8c523f2 ENH: faceOnlySet: loosened tolerance. Fixes #1079. 2018-11-19 15:58:09 +00:00
a7a346b206 STYLE: indentation for FatalIOErrorInFunction calls 2018-11-06 09:49:22 +01:00
f5baa9a583 ENH: extend globalIndex toGlobal methods
- now applicable to labelLists.

Note:
  in some situations it will be more efficient to use
  Foam::identity() directly. Eg,

     globalIndex globalCells(mesh.nCells());
     ...
     labelList cellIds
     (
         identity(globalCells.localSize(), globalCells.localStart())
     );
2018-11-05 16:23:33 +01:00
53b9961887 STYLE: remove unused variables 2018-11-03 17:51:02 +01:00
fd54070c3a BUG: eof errors in the STARCD, VTK file reader (#1059)
- previously simply read files until the input stream went bad and no
  more lines could be read.  With the more stringent checking of
  values read (commit 0ce7e364a4) this approach causes problems.

  Use the underlying tokenizer instead to decide about termination.
2018-11-03 15:46:37 +01:00
7cb51f5b98 ENH: limit vtk floatField range (fixes #1055)
- for space-savings the VTK fields are normally written as 'float'
  rather than double. When a double field contains very large values,
  these can result in a overflow when converted to float.

  Now trap these with the appropriate numeric limits.
  No warning when these values are clipped: it should be readily
  apparent from the output.

ENH: handle symmTensor component swapping directly on VTK output.

- use VTK output routines in vtkSurfaceWriter to benefit from the
  above changes
2018-11-01 17:58:36 +00:00
aa7cce912c STYLE: eliminate unnecessary DIY version of cellPoints(label) 2018-11-01 14:23:21 +00:00
3366a16b35 ENH: pass through format options from sampledSurface to proxy writers
- preliminary work to #1057

- add dictionary selectable format (ascii|binary) to
  VTKsurfaceFormat, VTPsurfaceFormat
2018-11-01 14:09:53 +00:00
097e54a74f BUG: isoSurfaceCell: pre-filtering of cells misses lopping off a corner. Fixes #1062. 2018-11-01 13:06:06 +00:00
6ba6d7466d ENH: general consistency and documentation update for surface writers 2018-10-19 19:26:05 +02:00
d63b4cd4f4 ENH: minor changes to rationalize sampledSurface
- make hasFaceId a top-level virtual method and remove keepIds
  equivalent from sampledTriSurfaceMesh. This makes the property
  available without casting.

- New sampling type 'none'.
  Can be used to temporarily disable a sampling surface definition,
  or to provide boilerplate for overwriting later.
2018-10-19 16:02:44 +02:00
07dafe7b0b STYLE: use range-for when looping dictionary entries.
- as part of the cleanup of dictionary access methods (c6520033c9)
  made the dictionary class single inheritance from IDLList<entry>.

  This eliminates any ambiguities for iterators and allows
  for simple use of range-for looping.

  Eg,
      for (const entry& e : topDict))
      {
          Info<< "entry:" << e.keyword() << " is dict:" << e.isDict() << nl;
      }

   vs

      forAllConstIter(dictionary, topDict, iter))
      {
          Info<< "entry:" << iter().keyword()
              << " is dict:" << iter().isDict() << nl;
      }
2018-10-19 13:08:24 +02:00
3b74512231 ENH: cleanup of Enum class
- more dictionary-like methods, enforce keyType::LITERAL for all
  lookups to avoid any spurious keyword matching.

- new readEntry, readIfPresent methods

- The get() method replaces the now deprecate lookup() method.

- Deprecate lookupOrFailsafe()
  Failsafe behaviour is now an optional parameter for lookupOrDefault,
  which makes it easier to tailor behaviour at runtime.

- output of the names is now always flatted without line-breaks.
  Thus,

     os << flatOutput(someEnumNames.names()) << nl;
     os << someEnumNames << nl;

  both generate the same output.

- Constructor now uses C-string (const char*) directly instead of
  Foam::word in its initializer_list.

- Remove special enum + initializer_list constructor form since
  it can create unbounded lookup indices.

- Removd old hasEnum, hasName forms that were provided during initial
  transition from NamedEnum.

- Added static_assert on Enum contents to restrict to enum or
  integral values.  Should not likely be using this class to enumerate
  other things since it internally uses an 'int' for its values.

  Changed volumeType accordingly to enumerate on its type (enum),
  not the class itself.
2018-10-18 12:57:32 +02:00
8fabc32539 ENH: simplify objectRegistry access names (issue #322)
New name:  findObject(), cfindObject()
  Old name:  lookupObjectPtr()

      Return a const pointer or nullptr on failure.

  New name:  findObject()
  Old name:  --

      Return a non-const pointer or nullptr on failure.

  New name:  getObjectPtr()
  Old name:  lookupObjectRefPtr()

      Return a non-const pointer or nullptr on failure.
      Can be called on a const object and it will perform a
      const_cast.

- use these updated names and functionality in more places

NB: The older methods names are deprecated, but continue to be defined.
2018-10-17 16:44:10 +02:00
496e1cd0d2 STYLE: enforce Cartesian transform (issue #1027)
- searchable surfaces
- pointToPointPlanarInterpolation
- sampled planes
- surfaceMeshConvert, surfaceMeshExport, surfaceMeshImport
2018-10-01 22:55:59 +02:00
b17bcd67b7 ENH: correct suspicious coordinate system conversions (issue #1027)
- arraySet :
     was translate + transform
     now use globalPosition (== transform + translate).

     Explicitly limit to Cartesian coordinate system for clarity.
2018-10-01 17:10:35 +02:00
6697bb4735 ENH: improve, simplify, rationalize coordinate system handling (issue #863)
Previously the coordinate system functionality was split between
coordinateSystem and coordinateRotation. The coordinateRotation stored
the rotation tensor and handled all tensor transformations.

The functionality has now been revised and consolidated into the
coordinateSystem classes. The sole purpose of coordinateRotation
is now just to provide a selectable mechanism of how to define the
rotation tensor (eg, axis-angle, euler angles, local axes) for user
input, but after providing the appropriate rotation tensor it has
no further influence on the transformations.

--

The coordinateSystem class now contains an origin and a base rotation
tensor directly and various transformation methods.

  - The origin represents the "shift" for a local coordinate system.

  - The base rotation tensor represents the "tilt" or orientation
    of the local coordinate system in general (eg, for mapping
    positions), but may require position-dependent tensors when
    transforming vectors and tensors.

For some coordinate systems (currently the cylindrical coordinate system),
the rotation tensor required for rotating a vector or tensor is
position-dependent.

The new coordinateSystem and its derivates (cartesian, cylindrical,
indirect) now provide a uniform() method to define if the rotation
tensor is position dependent/independent.

The coordinateSystem transform and invTransform methods are now
available in two-parameter forms for obtaining position-dependent
rotation tensors. Eg,

      ... = cs.transform(globalPt, someVector);

In some cases it can be useful to use query uniform() to avoid
storage of redundant values.

      if (cs.uniform())
      {
          vector xx = cs.transform(someVector);
      }
      else
      {
          List<vector> xx = cs.transform(manyPoints, someVector);
      }

Support transform/invTransform for common data types:
   (scalar, vector, sphericalTensor, symmTensor, tensor).

====================
  Breaking Changes
====================

- These changes to coordinate systems and rotations may represent
  a breaking change for existing user coding.

- Relocating the rotation tensor into coordinateSystem itself means
  that the coordinate system 'R()' method now returns the rotation
  directly instead of the coordinateRotation. The method name 'R()'
  was chosen for consistency with other low-level entities (eg,
  quaternion).

  The following changes will be needed in coding:

      Old:  tensor rot = cs.R().R();
      New:  tensor rot = cs.R();

      Old:  cs.R().transform(...);
      New:  cs.transform(...);

  Accessing the runTime selectable coordinateRotation
  has moved to the rotation() method:

      Old:  Info<< "Rotation input: " << cs.R() << nl;
      New:  Info<< "Rotation input: " << cs.rotation() << nl;

- Naming consistency changes may also cause code to break.

      Old:  transformVector()
      New:  transformPrincipal()

  The old method name transformTensor() now simply becomes transform().

====================
  New methods
====================

For operations requiring caching of the coordinate rotations, the
'R()' method can be used with multiple input points:

       tensorField rots(cs.R(somePoints));

   and later

       Foam::transformList(rots, someVectors);

The rotation() method can also be used to change the rotation tensor
via a new coordinateRotation definition (issue #879).

The new methods transformPoint/invTransformPoint provide
transformations with an origin offset using Cartesian for both local
and global points. These can be used to determine the local position
based on the origin/rotation without interpreting it as a r-theta-z
value, for example.

================
  Input format
================

- Streamline dictionary input requirements

  * The default type is cartesian.
  * The default rotation type is the commonly used axes rotation
    specification (with e1/e2/3), which is assumed if the 'rotation'
    sub-dictionary does not exist.

    Example,

    Compact specification:

        coordinateSystem
        {
            origin  (0 0 0);
            e2      (0 1 0);
            e3      (0.5 0 0.866025);
        }

    Full specification (also accepts the longer 'coordinateRotation'
    sub-dictionary name):

        coordinateSystem
        {
            type    cartesian;
            origin  (0 0 0);

            rotation
            {
                type    axes;
                e2      (0 1 0);
                e3      (0.5 0 0.866025);
            }
        }

   This simplifies the input for many cases.

- Additional rotation specification 'none' (an identity rotation):

      coordinateSystem
      {
          origin  (0 0 0);
          rotation { type none; }
      }

- Additional rotation specification 'axisAngle', which is similar
  to the -rotate-angle option for transforming points (issue #660).
  For some cases this can be more intuitive.

  For example,

      rotation
      {
          type    axisAngle;
          axis    (0 1 0);
          angle   30;
      }
  vs.
      rotation
      {
          type    axes;
          e2      (0 1 0);
          e3      (0.5 0 0.866025);
      }

- shorter names (or older longer names) for the coordinate rotation
  specification.

     euler         EulerRotation
     starcd        STARCDRotation
     axes          axesRotation

================
  Coding Style
================
- use Foam::coordSystem namespace for categories of coordinate systems
  (cartesian, cylindrical, indirect). This reduces potential name
  clashes and makes a clearer declaration. Eg,

      coordSystem::cartesian csys_;

  The older names (eg, cartesianCS, etc) remain available via typedefs.

- added coordinateRotations namespace for better organization and
  reduce potential name clashes.
2018-10-01 13:54:10 +02:00
64c3e484bb STYLE: add nBoundaryFaces() method to primitiveMesh
- nBoundaryFaces() is often used and is identical to
  (nFaces() - nInternalFaces()).

- forward the mesh nInternalFaces() and nBoundaryFaces() to
  polyBoundaryMesh as nFaces() and start() respectively,
  for use when operating on a polyBoundaryMesh.

STYLE:

- use identity() function with starting offset when creating boundary maps.

     labelList map
     (
         identity(mesh.nBoundaryFaces(), mesh.nInternalFaces())
     );

  vs.

     labelList map(mesh.nBoundaryFaces());
     forAll(map, i)
     {
         map[i] = mesh.nInternalFaces() + i;
     }
2018-09-27 10:17:30 +02:00
47519b2e04 ENH: new sampling type "surfaceCut"
- an alternative to distanceSurface (with distance zero) that uses
  a cell cutting approach instead of an iso-surface.
2018-09-18 08:40:46 +02:00
4aa94bd1d7 ENH: improve distanceSurface handling (issue #1012)
- 'signed' input parameter only mandatory for distance > 0.
  A distance <= 0 is always signed and the input parameter is ignored.

- Use normal distance when distance == 0. This has no effect when
  the surface has no open edges, but improves on rounding issues
  around the zero crossing when the surface has open edges.

  This may still need future revisiting.
2018-09-19 14:18:57 +02:00
9973c378b9 ENH: refactor cutting-plane cell selection
- avoid duplicate code by relocating cellZone selection and bounding box
  sub-selection into cuttingPlane and cuttingSurfaceBaseSelection.
  Allows reuse by inherited classes (sampledPlane, surfMeshSamplePlane).
2018-09-14 11:18:44 +02:00
a8ef9e9742 ENH: make cuttingPlane cell walker an algorithm
- takes two general actions:
  1. orient edge in canonical direction (positive gradient) and detect
     any edge intersection.
  2. edge intersection alpha (0-1)

- refactor into a cuttingSurfaceBase intermediate class with the
  actions as templated parameters rather than function pointers. This
  allows the use of lambda functions with captures from the caller.
2018-09-14 09:34:14 +02:00
7cf232ceec STYLE: split up cuttingPlane source files 2018-09-14 09:19:32 +02:00
8122a8a70f ENH: orient cut plane faces based on the (oriented) edge gradient
- Since the local edges are oriented according to the gradient,
  they can also be used to determine the correct face orientation.

This generalizes the algorithm for future reuse.
2018-09-12 11:16:30 +02:00
4d6f0498d6 ENH: use vector::normalise and VectorSpace::normalised for clarity 2018-08-10 15:18:29 +02:00
c1964d7807 ENH: distinguish between face areaNormal/unitNormal in the code 2018-08-10 15:43:06 +02:00
dd9ecd4988 ENH: add missing Hash function for List/UList (issue #966)
- there were previously no hashing mechanisms for lists so they
  would fall back to the definition for primitives and hash the
  memory location of the allocated List object.

- provide a UList::Hash<> sub-class for inheritance, and also a global
  specialization for UList<T>, List<T> such that the hash value for
  List<List<T>> cascades properly.

- provide similar function in triFace to ensure that it remains
  similar in behaviour to face.

- added SymmHash to Pair, for use when order is unimportant.

STYLE: use string::hash() more consistently

- no particular reason to use Hash<word>() which forwards to
  string::hash() anyhow
2018-08-08 23:54:27 +02:00
7bb68b4dea ENH: new cuttingPlane cutting scheme
- takes a direct approach of determining which cells are cut and walks
  the cell faces directly to build the resulting surface.

- better handling of corner cases.
  * Avoids redundant points when the cut passes exactly through a
    mesh point.
  * Supresses generation of duplicates faces when the plane cut
    coincides exactly with a mesh face.

- for severely concave cells where the plane cuts a face multiple times
  there is currently no remedial action taken, except to note the
  failure and unwind the insertion of the corresponding points and
  faces.
2018-08-07 22:23:16 +02:00
544941b961 ENH: support zone and zones for sampled cutting planes, sampledIsoSurface
- rework to use bitSet for more flexibility
2018-08-06 18:45:10 +02:00
de2eed3e7d ENH: additional methods and improvements to plane
- signedDistance() method is like distance() but retains
  the positive/negative sign for the side of the plane.

- the sign() method returns the sign as -1,0,+1 integer for
  classification purposes where it is important to distinguish between
  a zero value and a positive value (eg, for cutting). Optional
  tolerance can be supplied to round for zero.

- refactor and inlined simple and frequently used methods.

- add boundBox faceCentre() method, which can be useful for creating
  clipping planes from a bounding box.
  Relocated treeBoundBox faceNormals to boundBox since they apply
  equally there - the meaning of the faces (x-min, x-max, etc)
  is the same, even if the point addressing for the faces differs.
2018-08-03 23:17:49 +02:00
84e2df4994 ENH: added ZoneMesh indices(), selection() with wordRes matcher
- rationalized code dealing with extraction of name or indices from
  coordinateSystems, polyBoundaryMesh, faBoundaryMesh, fvBoundaryMesh,
  ZoneMesh to use internal implementations that allow direct
  searching/matching without building an intermediate list of names.

- simpler and more efficient handling of patch group matching.
2018-08-03 22:40:19 +02:00
c0c59b9abd ENH: force tetBasePtIs() into existence before isoSurfaceCell cutting loop
- ensures that things stay synchronized when the processor domains
  have unequal looping.
2018-08-03 19:34:26 +02:00
f00c7a655c COMP: rename dictionary::read<T> to dictionary::readEntry<T>
- avoids compiler ambiguity when virtual methods such as
  IOdictionary::read() exist.

- the method was introduced in 1806, and was thus not yet widely used
2018-07-30 15:52:40 +02:00
dbe0db1d9a ENH: fvMeshSubset improvements (issue #951)
- what was previously termed 'setLargeCellSubset()' is now simply
  'setCellSubset()' and supports memory efficient interfaces.

  The new parameter ordering avoids ambiguities caused by default
  parameters.

  Old parameter order:

      setLargeCellSubset
      (
          const labelList& region,
          const label currentRegion,
          const label patchID = -1,
          const bool syncCouples = true
      );

  New parameter order:

      setCellSubset
      (
          const label regioni,
          const labelUList& regions,
          const label patchID = -1,
          const bool syncCouples = true
      );

   And without ambiguity:

      setCellSubset
      (
          const labelUList& selectedCells,
          const label patchID = -1,
          const bool syncCouples = true
      );

- support bitSet directly for specifying the selectedCells for
  memory efficiency and ease of use.

- Additional constructors to perform setCellSubset() immediately,
  which simplifies coding.

  For example,

      meshParts.set
      (
          zonei,
          new fvMeshSubset(mesh, selectedCells)
      );

  Or even

      return autoPtr<fvMeshSubset>::New(mesh, selectedCells);
2018-07-25 18:58:00 +02:00