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Author SHA1 Message Date
Henry Weller
fd2ac09c4e mapFields: reset the FOAM_CASE environment variable 
Patch proveded by Alexey Matveichev
Resolves bug-report http://bugs.openfoam.org/view.php?id=2229
 2016-09-17 14:53:15 +01:00
Henry Weller
91c8c053a9 setInitialMultiRegionDeltaT: update to be consistent with the standard setInitialDeltaT 
Resolves bug-report http://bugs.openfoam.org/bug_change_status_page.php
 2016-09-16 17:39:50 +01:00
Henry Weller
899fe81eba PatchToPatchInterpolate: Update to use the tmp ref() non-const access function 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2248
 2016-09-16 14:49:50 +01:00
Henry Weller
7cc35abc3a GAMGAgglomeration: corrected continueAgglomerating 
Patch provided by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2226
 2016-09-16 11:10:03 +01:00
Henry Weller
f281477d85 rigidBodyMotion: Change the transform averaging to use approximate inverse-distance weighting 
Now works correctly for an arbitrary number of bodies
Resolves bug-report http://bugs.openfoam.org/view.php?id=2211
 2016-09-14 14:14:14 +01:00
Henry Weller
8dc78d188a rigidBodyMeshMotionSolver: experimental nDoF mesh-motion solver supporting the displacement-based elliptic solvers 
Specification for the tutorials/multiphase/interDyMFoam/ras/floatingObject case:

dynamicFvMesh       dynamicMotionSolverFvMesh;

motionSolverLibs   ("librigidBodyMeshMotion.so" "libfvMotionSolvers.so");

solver             rigidBodyMotionSolver;

rigidBodyMotionSolverCoeffs
{
    report          on;

    meshSolver
    {
        solver displacementLaplacian;

        displacementLaplacianCoeffs
        {
            diffusivity inverseDistance (floatingObject);
        }
    }
.
.
.
 2016-09-14 09:59:02 +01:00
Henry Weller
e75d811b7d MGridGenGAMGAgglomeration: Update call to continueAgglomerating 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2244
 2016-09-14 09:41:03 +01:00
Henry Weller
b3e5224753 GAMGSolverSolve: Replace PBiCG with PBiCGStab to solve the coarsest-level of asymmetric matrices 2016-09-10 16:44:01 +01:00
Henry Weller
5c1a647092 Merge branch 'master' of github.com:OpenFOAM/OpenFOAM-dev 2016-09-09 21:49:06 +01:00
Henry Weller
34928b7c82 reactingEulerFoam/interfacialModels/dragModels: Corrected file permissions 2016-09-09 21:48:29 +01:00
Chris Greenshields
b5e263be0d foamEtcFile: replaced redundant package directory name 2016-09-09 20:00:26 +01:00
Henry Weller
86ccbca390 combustionModels/FSD: Corrected 
Renamed 'omega' to 'FSDomega' to avoid a clash with the k-omega
turbulence models.

Resolves bug-report http://bugs.openfoam.org/view.php?id=2237
 2016-09-09 16:23:28 +01:00
Henry Weller
8e37aa0a37 renumberMethods: Added missing .C file for structuredRenumber 2016-09-09 14:54:12 +01:00
Henry Weller
0a1300d882 wmake: Updated '-q' option to work on Ubuntu and other 'dash'-based GNU/Linux distributions 2016-09-09 14:53:10 +01:00
Henry Weller
4fcdb0b4e4 codedFvOption: Added cellSet support 
Patch provided by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2240
 2016-09-09 12:29:06 +01:00
Henry Weller
cb1a012b66 structuredRenumber: Corrected to run in parallel 
Patch contributed by Mattijs Janssens
 2016-09-09 12:20:25 +01:00
Henry Weller
8e0981d9ed functionObjectList::readFunctionObject: Added support for region specification 
Now the postProcess utility '-region' option works correctly, e.g. for
the chtMultiRegionSimpleFoam/heatExchanger case

postProcess -region air -func "mag(U)"

calculates 'mag(U)' for all the time steps in region 'air'.
 2016-09-09 11:01:37 +01:00
Henry Weller
360ab50ed6 tutorials/multiphase/interFoam/ras/weirOverflow: Updated to improve robustness 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2236
 2016-09-07 14:05:37 +01:00
Henry Weller
427f2c65b9 GAMGAgglomeration: Add support for nCellsInCoarsestLevel = 1 and better agglomeration termination 
Patch provided by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2226
 2016-09-06 13:29:05 +01:00
Henry Weller
41eeaaede4 algebraicPairGAMGAgglomeration: agglomerate based on the maximum of the upper and lower coefficients 
Patch provided by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2234
 2016-09-06 12:56:54 +01:00
Henry Weller
31f70137af etc/config.sh/settings: Updated set of WM_CC, WM_CXX etc. variables to compile ThirdParty software 
Patch provided by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2051
 2016-09-05 20:48:50 +01:00
Henry Weller
e86688a53c Solvers: Corrected typo 2016-09-05 11:58:41 +01:00
Henry Weller
4502b7a557 Updated header 2016-09-05 11:57:41 +01:00
Henry Weller
0857f479a8 PBiCGStab: New preconditioned bi-conjugate gradient stabilized solver for asymmetric lduMatrices 
using a run-time selectable preconditioner

References:
    Van der Vorst, H. A. (1992).
    Bi-CGSTAB: A fast and smoothly converging variant of Bi-CG
    for the solution of nonsymmetric linear systems.
    SIAM Journal on scientific and Statistical Computing, 13(2), 631-644.

    Barrett, R., Berry, M. W., Chan, T. F., Demmel, J., Donato, J.,
    Dongarra, J., Eijkhout, V., Pozo, R., Romine, C. & Van der Vorst, H.
    (1994).
    Templates for the solution of linear systems:
    building blocks for iterative methods
    (Vol. 43). Siam.

See also: https://en.wikipedia.org/wiki/Biconjugate_gradient_stabilized_method

Tests have shown that PBiCGStab with the DILU preconditioner is more
robust, reliable and shows faster convergence (~2x) than PBiCG with
DILU, in particular in parallel where PBiCG occasionally diverges.

This remarkable improvement over PBiCG prompted the update of all
tutorial cases currently using PBiCG to use PBiCGStab instead.  If any
issues arise with this update please report on Mantis: http://bugs.openfoam.org
 2016-09-05 11:46:42 +01:00
Henry Weller
b19fa43100 polyMesh: clear cellTree if mesh moves 
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2235
 2016-09-04 21:16:55 +01:00
Henry Weller
49bce39429 PV*Readers/Allwmake: set CXX and CC if required 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2233
 2016-09-04 21:05:20 +01:00
Henry Weller
8f2b34dc06 polyBoundaryMesh: Remove patchGroups which clash with patch names 
This allows freedom in the naming of patches when patchGroup-based
boundary specification is not used.

Patch contributed by Mattijs Janssens
 2016-09-04 10:35:19 +01:00
Henry Weller
9c7101739b tutorials/multiphase/interDyMFoam/ras/DTCHull: Corrected specification of restraints 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2224
 2016-09-03 21:14:17 +01:00
Henry Weller
15fda67bbc decomposePar: corrected decomposeParDict read using -region option 
Patch contributed by Mattijs Janssens
Resolves bug-report http://bugs.openfoam.org/view.php?id=2227
 2016-09-03 20:54:16 +01:00
Henry Weller
c193493822 EulerCoordinateRotation,STARCDCoordinateRotation: Corrected typo 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2225
 2016-09-03 16:46:01 +01:00
Henry Weller
96f2562e93 OpenFOAM-dev/etc/bashrc: Use 'pwd -P' to handle relative paths and links 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2223
 2016-09-03 15:57:52 +01:00
Henry Weller
8185f1d62e Revert "polyBoundaryMesh::groupPatchIDs(): Make name clash between patch and group name fatal" 
This reverts commit f38f0d3e86.
 2016-08-26 11:44:56 +01:00
Henry Weller
f38f0d3e86 polyBoundaryMesh::groupPatchIDs(): Make name clash between patch and group name fatal 
If this clash is allowed boundary conditions set by wildcards are
processed incorrectly.
 2016-08-25 16:42:08 +01:00
Henry Weller
74e1352cc2 src/Pstream: Added Allwclean consistent with the Allwmake 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2218
 2016-08-25 08:25:12 +01:00
Henry Weller
bf9c6b6d17 foamToVTK, PVFoamReader: Resolve problems converting VTK_WEDGE 
- There will be triangles rendered inside the mesh (when
    surface-rendering), because one of the cell's triangles is defined
    as a quadrangle in VTK_WEDGE.

  - Therefore, this VTK_WEDGE representation is only used when
    decomposing the mesh, otherwise the correct representation is done
    by VTK_POLYHEDRON.

  - Furthermore, using VTK_PYRAMID gave worse result, because it renders
    2 triangles inside the mesh for the collapsed quadrangle, likely due
    to mismatch with the adjacent cell's face.

  - Using VTK_HEXAHEDRON was not tested in this iteration, given that it
    should give even worse results, when compared to using VTK_PYRAMID.

Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2099
 2016-08-24 22:08:10 +01:00
Henry Weller
e476f80e7a functionObjects: Improved handling of multi-file indexing and code style 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2216
 2016-08-24 19:34:00 +01:00
Henry Weller
fc44390db3 forceCoeffs: Removed duplicate header writing 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2216
 2016-08-24 16:01:29 +01:00
Henry Weller
c6f9ed748a functionObjects::forces: Corrected file names when using the 'binData' option 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2214
 2016-08-24 11:24:27 +01:00
Henry Weller
655fb3841a foamToVTK::vtkTopo: Apply fix from #1633 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2213
 2016-08-24 09:45:23 +01:00
Henry Weller
5c9b80a083 functionObjects::volRegion: Cache integral properties for writeFileHeader 2016-08-24 09:32:34 +01:00
Henry Weller
428b1d8866 Updated headers 2016-08-24 08:57:44 +01:00
Henry Weller
962910bd43 lagrangian::Analytical: improved analytical integration for the U-equation 
Patch contributed by Timo Niemi
In response to bug-report http://bugs.openfoam.org/view.php?id=2199
 2016-08-23 22:03:24 +01:00
Henry Weller
a778622dfa src/parallel/decompose: Remove dependency on "SCOTCH_ROOT" and repair "decompose/Allwclean" 
Patch contributed by Bruno Santos
Resolves patch request http://bugs.openfoam.org/view.php?id=2212
 2016-08-23 21:53:35 +01:00
Henry Weller
c482490a60 etc/bashrc, etc/config.sh: 
- "$FOAM_USER_APPBIN" and "$FOAM_USER_LIBBIN" have been added to
    "foamOldDirs" in "etc/bashrc" and "etc/config.sh/unset"

  - "$OPAL_PREFIX" is now undefined in the option "SYSTEMOPENMPI" within
    "etc/config.sh/mpi", but only if the path defined in this variable
    is cleaned when using "foamCleanPath".

  - "$OPAL_PREFIX" is now also conditionally undefined in
    "etc/config.sh/unset" when the path is picked up by "foamCleanPath".

Patch contributed by Bruno Santos
Resolved bug-report http://bugs.openfoam.org/view.php?id=2210
 2016-08-23 21:02:55 +01:00
Henry Weller
f75e69b5f7 wmake/rules/linux64.*KNL: Improved optimization option for Intel MIC (Knights Landing) processor 
Patch contributed by Paul Edwards, Intel.
 2016-08-22 16:27:46 +01:00
Henry Weller
e6057ee3ec Corrected documentation in classes derived from temperatureCoupleBase 
Patch contributed by Bruno Santos
Resolves bug-report http://bugs.openfoam.org/view.php?id=2207
 2016-08-22 14:31:40 +01:00
Henry Weller
0ea2023ae0 codingStyleGuide: Improved formatting 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2194
 2016-08-20 09:33:11 +01:00
Henry Weller
181558028c septernion: Correct quaternion normalization after averaging 
Resolves bug-report http://bugs.openfoam.org/view.php?id=2203
 2016-08-19 20:32:30 +01:00
Henry Weller
b075f10053 /primitives/triad: Initialize array to avoid warning from icpc 2016-08-18 11:22:15 +01:00
Henry Weller
6635d2edfe ODESolvers::adaptiveSolver: Changed functions which need not be to non-virtual 
Resolves warnings from clang
 2016-08-18 10:36:52 +01:00