/* * Copyright 1997, Regents of the University of Minnesota * * parmetis.c * * This file contains top level routines that are used by ParMETIS * * Started 10/14/97 * George * * $Id: parmetis.c,v 1.2 2003/07/24 18:39:11 karypis Exp $ * */ #include /************************************************************************* * This function is the entry point for KMETIS with seed specification * in options[7] **************************************************************************/ void METIS_PartGraphKway2(int *nvtxs, idxtype *xadj, idxtype *adjncy, idxtype *vwgt, idxtype *adjwgt, int *wgtflag, int *numflag, int *nparts, int *options, int *edgecut, idxtype *part) { int i; float *tpwgts; tpwgts = fmalloc(*nparts, "KMETIS: tpwgts"); for (i=0; i<*nparts; i++) tpwgts[i] = 1.0/(1.0*(*nparts)); METIS_WPartGraphKway2(nvtxs, xadj, adjncy, vwgt, adjwgt, wgtflag, numflag, nparts, tpwgts, options, edgecut, part); free(tpwgts); } /************************************************************************* * This function is the entry point for KWMETIS with seed specification * in options[7] **************************************************************************/ void METIS_WPartGraphKway2(int *nvtxs, idxtype *xadj, idxtype *adjncy, idxtype *vwgt, idxtype *adjwgt, int *wgtflag, int *numflag, int *nparts, float *tpwgts, int *options, int *edgecut, idxtype *part) { int i, j; GraphType graph; CtrlType ctrl; if (*numflag == 1) Change2CNumbering(*nvtxs, xadj, adjncy); SetUpGraph(&graph, OP_KMETIS, *nvtxs, 1, xadj, adjncy, vwgt, adjwgt, *wgtflag); if (options[0] == 0) { /* Use the default parameters */ ctrl.CType = KMETIS_CTYPE; ctrl.IType = KMETIS_ITYPE; ctrl.RType = KMETIS_RTYPE; ctrl.dbglvl = KMETIS_DBGLVL; } else { ctrl.CType = options[OPTION_CTYPE]; ctrl.IType = options[OPTION_ITYPE]; ctrl.RType = options[OPTION_RTYPE]; ctrl.dbglvl = options[OPTION_DBGLVL]; } ctrl.optype = OP_KMETIS; ctrl.CoarsenTo = 20*(*nparts); ctrl.maxvwgt = 1.5*((graph.vwgt ? idxsum(*nvtxs, graph.vwgt) : (*nvtxs))/ctrl.CoarsenTo); InitRandom(options[7]); AllocateWorkSpace(&ctrl, &graph, *nparts); IFSET(ctrl.dbglvl, DBG_TIME, InitTimers(&ctrl)); IFSET(ctrl.dbglvl, DBG_TIME, starttimer(ctrl.TotalTmr)); *edgecut = MlevelKWayPartitioning(&ctrl, &graph, *nparts, part, tpwgts, 1.000); IFSET(ctrl.dbglvl, DBG_TIME, stoptimer(ctrl.TotalTmr)); IFSET(ctrl.dbglvl, DBG_TIME, PrintTimers(&ctrl)); FreeWorkSpace(&ctrl, &graph); if (*numflag == 1) Change2FNumbering(*nvtxs, xadj, adjncy, part); } /************************************************************************* * This function is the entry point for the node ND code for ParMETIS **************************************************************************/ void METIS_NodeNDP(int nvtxs, idxtype *xadj, idxtype *adjncy, int npes, int *options, idxtype *perm, idxtype *iperm, idxtype *sizes) { int i, ii, j, l, wflag, nflag; GraphType graph; CtrlType ctrl; idxtype *cptr, *cind; if (options[0] == 0) { /* Use the default parameters */ ctrl.CType = ONMETIS_CTYPE; ctrl.IType = ONMETIS_ITYPE; ctrl.RType = ONMETIS_RTYPE; ctrl.dbglvl = ONMETIS_DBGLVL; ctrl.oflags = ONMETIS_OFLAGS; ctrl.pfactor = ONMETIS_PFACTOR; ctrl.nseps = ONMETIS_NSEPS; } else { ctrl.CType = options[OPTION_CTYPE]; ctrl.IType = options[OPTION_ITYPE]; ctrl.RType = options[OPTION_RTYPE]; ctrl.dbglvl = options[OPTION_DBGLVL]; ctrl.oflags = options[OPTION_OFLAGS]; ctrl.pfactor = options[OPTION_PFACTOR]; ctrl.nseps = options[OPTION_NSEPS]; } if (ctrl.nseps < 1) ctrl.nseps = 1; ctrl.optype = OP_ONMETIS; ctrl.CoarsenTo = 100; IFSET(ctrl.dbglvl, DBG_TIME, InitTimers(&ctrl)); IFSET(ctrl.dbglvl, DBG_TIME, starttimer(ctrl.TotalTmr)); InitRandom(-1); if (ctrl.oflags&OFLAG_COMPRESS) { /*============================================================ * Compress the graph ==============================================================*/ cptr = idxmalloc(nvtxs+1, "ONMETIS: cptr"); cind = idxmalloc(nvtxs, "ONMETIS: cind"); CompressGraph(&ctrl, &graph, nvtxs, xadj, adjncy, cptr, cind); if (graph.nvtxs >= COMPRESSION_FRACTION*(nvtxs)) { ctrl.oflags--; /* We actually performed no compression */ GKfree(&cptr, &cind, LTERM); } else if (2*graph.nvtxs < nvtxs && ctrl.nseps == 1) ctrl.nseps = 2; } else { SetUpGraph(&graph, OP_ONMETIS, nvtxs, 1, xadj, adjncy, NULL, NULL, 0); } /*============================================================= * Do the nested dissection ordering --=============================================================*/ ctrl.maxvwgt = 1.5*(idxsum(graph.nvtxs, graph.vwgt)/ctrl.CoarsenTo); AllocateWorkSpace(&ctrl, &graph, 2); idxset(2*npes-1, 0, sizes); MlevelNestedDissectionP(&ctrl, &graph, iperm, graph.nvtxs, npes, 0, sizes); FreeWorkSpace(&ctrl, &graph); if (ctrl.oflags&OFLAG_COMPRESS) { /* Uncompress the ordering */ if (graph.nvtxs < COMPRESSION_FRACTION*(nvtxs)) { /* construct perm from iperm */ for (i=0; invtxs; if (nvtxs == 0) { GKfree(&graph->gdata, &graph->rdata, &graph->label, LTERM); return; } /* Determine the weights of the partitions */ tvwgt = idxsum(nvtxs, graph->vwgt); tpwgts2[0] = tvwgt/2; tpwgts2[1] = tvwgt-tpwgts2[0]; if (cpos >= npes-1) ubfactor = ORDER_UNBALANCE_FRACTION; else ubfactor = 1.05; MlevelNodeBisectionMultiple(ctrl, graph, tpwgts2, ubfactor); IFSET(ctrl->dbglvl, DBG_SEPINFO, printf("Nvtxs: %6d, [%6d %6d %6d]\n", graph->nvtxs, graph->pwgts[0], graph->pwgts[1], graph->pwgts[2])); if (cpos < npes-1) { sizes[2*npes-2-cpos] = graph->pwgts[2]; sizes[2*npes-2-(2*cpos+1)] = graph->pwgts[1]; sizes[2*npes-2-(2*cpos+2)] = graph->pwgts[0]; } /* Order the nodes in the separator */ nbnd = graph->nbnd; bndind = graph->bndind; label = graph->label; for (i=0; igdata, &graph->rdata, &graph->label, LTERM); if (rgraph.nvtxs > MMDSWITCH || 2*cpos+1 < npes-1) MlevelNestedDissectionP(ctrl, &rgraph, order, lastvtx, npes, 2*cpos+1, sizes); else { MMDOrder(ctrl, &rgraph, order, lastvtx); GKfree(&rgraph.gdata, &rgraph.rdata, &rgraph.label, LTERM); } if (lgraph.nvtxs > MMDSWITCH || 2*cpos+2 < npes-1) MlevelNestedDissectionP(ctrl, &lgraph, order, lastvtx-rgraph.nvtxs, npes, 2*cpos+2, sizes); else { MMDOrder(ctrl, &lgraph, order, lastvtx-rgraph.nvtxs); GKfree(&lgraph.gdata, &lgraph.rdata, &lgraph.label, LTERM); } } /************************************************************************* * This function is the entry point for ONWMETIS. It requires weights on the * vertices. It is for the case that the matrix has been pre-compressed. **************************************************************************/ void METIS_NodeComputeSeparator(int *nvtxs, idxtype *xadj, idxtype *adjncy, idxtype *vwgt, idxtype *adjwgt, int *options, int *sepsize, idxtype *part) { int i, j, tvwgt, tpwgts[2]; GraphType graph; CtrlType ctrl; SetUpGraph(&graph, OP_ONMETIS, *nvtxs, 1, xadj, adjncy, vwgt, adjwgt, 3); tvwgt = idxsum(*nvtxs, graph.vwgt); if (options[0] == 0) { /* Use the default parameters */ ctrl.CType = ONMETIS_CTYPE; ctrl.IType = ONMETIS_ITYPE; ctrl.RType = ONMETIS_RTYPE; ctrl.dbglvl = ONMETIS_DBGLVL; } else { ctrl.CType = options[OPTION_CTYPE]; ctrl.IType = options[OPTION_ITYPE]; ctrl.RType = options[OPTION_RTYPE]; ctrl.dbglvl = options[OPTION_DBGLVL]; } ctrl.oflags = 0; ctrl.pfactor = 0; ctrl.nseps = 1; ctrl.optype = OP_ONMETIS; ctrl.CoarsenTo = amin(100, *nvtxs-1); ctrl.maxvwgt = 1.5*tvwgt/ctrl.CoarsenTo; InitRandom(options[7]); AllocateWorkSpace(&ctrl, &graph, 2); /*============================================================ * Perform the bisection *============================================================*/ tpwgts[0] = tvwgt/2; tpwgts[1] = tvwgt-tpwgts[0]; MlevelNodeBisectionMultiple(&ctrl, &graph, tpwgts, 1.05); *sepsize = graph.pwgts[2]; idxcopy(*nvtxs, graph.where, part); GKfree(&graph.gdata, &graph.rdata, &graph.label, LTERM); FreeWorkSpace(&ctrl, &graph); } /************************************************************************* * This function is the entry point for ONWMETIS. It requires weights on the * vertices. It is for the case that the matrix has been pre-compressed. **************************************************************************/ void METIS_EdgeComputeSeparator(int *nvtxs, idxtype *xadj, idxtype *adjncy, idxtype *vwgt, idxtype *adjwgt, int *options, int *sepsize, idxtype *part) { int i, j, tvwgt, tpwgts[2]; GraphType graph; CtrlType ctrl; SetUpGraph(&graph, OP_ONMETIS, *nvtxs, 1, xadj, adjncy, vwgt, adjwgt, 3); tvwgt = idxsum(*nvtxs, graph.vwgt); if (options[0] == 0) { /* Use the default parameters */ ctrl.CType = ONMETIS_CTYPE; ctrl.IType = ONMETIS_ITYPE; ctrl.RType = ONMETIS_RTYPE; ctrl.dbglvl = ONMETIS_DBGLVL; } else { ctrl.CType = options[OPTION_CTYPE]; ctrl.IType = options[OPTION_ITYPE]; ctrl.RType = options[OPTION_RTYPE]; ctrl.dbglvl = options[OPTION_DBGLVL]; } ctrl.oflags = 0; ctrl.pfactor = 0; ctrl.nseps = 1; ctrl.optype = OP_OEMETIS; ctrl.CoarsenTo = amin(100, *nvtxs-1); ctrl.maxvwgt = 1.5*tvwgt/ctrl.CoarsenTo; InitRandom(options[7]); AllocateWorkSpace(&ctrl, &graph, 2); /*============================================================ * Perform the bisection *============================================================*/ tpwgts[0] = tvwgt/2; tpwgts[1] = tvwgt-tpwgts[0]; MlevelEdgeBisection(&ctrl, &graph, tpwgts, 1.05); ConstructMinCoverSeparator(&ctrl, &graph, 1.05); *sepsize = graph.pwgts[2]; idxcopy(*nvtxs, graph.where, part); GKfree(&graph.gdata, &graph.rdata, &graph.label, LTERM); FreeWorkSpace(&ctrl, &graph); } /************************************************************************* * This function is the entry point for PWMETIS that accepts exact weights * for the target partitions **************************************************************************/ void METIS_mCPartGraphRecursive2(int *nvtxs, int *ncon, idxtype *xadj, idxtype *adjncy, idxtype *vwgt, idxtype *adjwgt, int *wgtflag, int *numflag, int *nparts, float *tpwgts, int *options, int *edgecut, idxtype *part) { int i, j; GraphType graph; CtrlType ctrl; float *mytpwgts; float avgwgt; if (*numflag == 1) Change2CNumbering(*nvtxs, xadj, adjncy); SetUpGraph(&graph, OP_PMETIS, *nvtxs, *ncon, xadj, adjncy, vwgt, adjwgt, *wgtflag); graph.npwgts = NULL; mytpwgts = fmalloc(*nparts, "mytpwgts"); scopy(*nparts, tpwgts, mytpwgts); if (options[0] == 0) { /* Use the default parameters */ ctrl.CType = McPMETIS_CTYPE; ctrl.IType = McPMETIS_ITYPE; ctrl.RType = McPMETIS_RTYPE; ctrl.dbglvl = McPMETIS_DBGLVL; } else { ctrl.CType = options[OPTION_CTYPE]; ctrl.IType = options[OPTION_ITYPE]; ctrl.RType = options[OPTION_RTYPE]; ctrl.dbglvl = options[OPTION_DBGLVL]; } ctrl.optype = OP_PMETIS; ctrl.CoarsenTo = 100; ctrl.nmaxvwgt = 1.5/(1.0*ctrl.CoarsenTo); InitRandom(options[7]); AllocateWorkSpace(&ctrl, &graph, *nparts); IFSET(ctrl.dbglvl, DBG_TIME, InitTimers(&ctrl)); IFSET(ctrl.dbglvl, DBG_TIME, starttimer(ctrl.TotalTmr)); ASSERT(CheckGraph(&graph)); *edgecut = MCMlevelRecursiveBisection2(&ctrl, &graph, *nparts, mytpwgts, part, 1.000, 0); /* { idxtype wgt[2048], minwgt, maxwgt, sumwgt; printf("nvtxs: %d, nparts: %d, ncon: %d\n", graph.nvtxs, *nparts, *ncon); for (i=0; i<(*nparts)*(*ncon); i++) wgt[i] = 0; for (i=0; i wgt[maxwgt*(*ncon)+j]) ? i : maxwgt; sumwgt += wgt[i*(*ncon)+j]; } avgwgt = (float)sumwgt / (float)*nparts; printf("min: %5d, max: %5d, avg: %5.2f, balance: %6.3f\n", wgt[minwgt*(*ncon)+j], wgt[maxwgt*(*ncon)+j], avgwgt, (float)wgt[maxwgt*(*ncon)+j] / avgwgt); } printf("\n"); } */ IFSET(ctrl.dbglvl, DBG_TIME, stoptimer(ctrl.TotalTmr)); IFSET(ctrl.dbglvl, DBG_TIME, PrintTimers(&ctrl)); FreeWorkSpace(&ctrl, &graph); GKfree((void *)&mytpwgts, LTERM); if (*numflag == 1) Change2FNumbering(*nvtxs, xadj, adjncy, part); } /************************************************************************* * This function takes a graph and produces a bisection of it **************************************************************************/ int MCMlevelRecursiveBisection2(CtrlType *ctrl, GraphType *graph, int nparts, float *tpwgts, idxtype *part, float ubfactor, int fpart) { int i, nvtxs, cut; float wsum, tpwgts2[2]; idxtype *label, *where; GraphType lgraph, rgraph; nvtxs = graph->nvtxs; if (nvtxs == 0) return 0; /* Determine the weights of the partitions */ tpwgts2[0] = ssum(nparts/2, tpwgts); tpwgts2[1] = 1.0-tpwgts2[0]; MCMlevelEdgeBisection(ctrl, graph, tpwgts2, ubfactor); cut = graph->mincut; label = graph->label; where = graph->where; for (i=0; i 2) SplitGraphPart(ctrl, graph, &lgraph, &rgraph); /* Free the memory of the top level graph */ GKfree(&graph->gdata, &graph->nvwgt, &graph->rdata, &graph->label, &graph->npwgts, LTERM); /* Scale the fractions in the tpwgts according to the true weight */ wsum = ssum(nparts/2, tpwgts); sscale(nparts/2, 1.0/wsum, tpwgts); sscale(nparts-nparts/2, 1.0/(1.0-wsum), tpwgts+nparts/2); /* Do the recursive call */ if (nparts > 3) { cut += MCMlevelRecursiveBisection2(ctrl, &lgraph, nparts/2, tpwgts, part, ubfactor, fpart); cut += MCMlevelRecursiveBisection2(ctrl, &rgraph, nparts-nparts/2, tpwgts+nparts/2, part, ubfactor, fpart+nparts/2); } else if (nparts == 3) { cut += MCMlevelRecursiveBisection2(ctrl, &rgraph, nparts-nparts/2, tpwgts+nparts/2, part, ubfactor, fpart+nparts/2); GKfree(&lgraph.gdata, &lgraph.nvwgt, &lgraph.label, LTERM); } return cut; }