update tests for changed argument names
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@ -90,7 +90,6 @@ class command_wrapper:
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setattr(__main__, func_name, handler)
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return func_name
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return x
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return None
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def __getattr__(self, name):
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"""
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@ -165,7 +165,7 @@ class PythonNumpy(unittest.TestCase):
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x = [ 1.0, 1.0, 1.0, 1.0, 1.0, 1.5, 1.5, 1.0, 1.0 ]
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types = [1, 2, 1]
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ids = [1, 2, 3]
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self.assertEqual(self.lmp.create_atoms(3, id=ids, type=types, x=x), 3)
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self.assertEqual(self.lmp.create_atoms(3, atomid=ids, atype=types, x=x), 3)
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self.lmp.command("mass * 2.0")
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self.lmp.command("pair_style zero 1.1")
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self.lmp.command("pair_coeff * *")
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@ -426,7 +426,7 @@ class PythonNumpy(unittest.TestCase):
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x = [ 1.0, 1.0, 1.0, 1.0, 1.0, 1.5 ]
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types = [1, 1]
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self.assertEqual(self.lmp.create_atoms(2, id=None, type=types, x=x), 2)
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self.assertEqual(self.lmp.create_atoms(2, atomid=None, atype=types, x=x), 2)
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nlocal = self.lmp.extract_global("nlocal")
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self.assertEqual(nlocal, 2)
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@ -471,7 +471,7 @@ class PythonNumpy(unittest.TestCase):
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tags = [1, 2, 3, 4, 5, 6, 7]
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types = [1, 1, 1, 1, 1, 1, 1]
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self.assertEqual(self.lmp.create_atoms(7, id=tags, type=types, x=x), 7)
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self.assertEqual(self.lmp.create_atoms(7, atomid=tags, atype=types, x=x), 7)
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nlocal = self.lmp.extract_global("nlocal")
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self.assertEqual(nlocal, 7)
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@ -510,7 +510,7 @@ class PythonNumpy(unittest.TestCase):
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tags = [1, 2, 3, 4, 5, 6, 7]
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types = [1, 1, 1, 1, 1, 1, 1]
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self.assertEqual(self.lmp.create_atoms(7, id=tags, type=types, x=x), 7)
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self.assertEqual(self.lmp.create_atoms(7, atomid=tags, atype=types, x=x), 7)
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nlocal = self.lmp.extract_global("nlocal")
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self.assertEqual(nlocal, 7)
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@ -544,7 +544,7 @@ class PythonNumpy(unittest.TestCase):
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tags = [1, 2, 3, 4, 5, 6, 7]
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types = [1, 1, 1, 1, 2, 2, 2]
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self.assertEqual(self.lmp.create_atoms(7, id=tags, type=types, x=x), 7)
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self.assertEqual(self.lmp.create_atoms(7, atomid=tags, atype=types, x=x), 7)
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nlocal = self.lmp.extract_global("nlocal")
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self.assertEqual(nlocal, 7)
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@ -609,7 +609,7 @@ class PythonNumpy(unittest.TestCase):
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tags = [1, 2, 3, 4, 5, 6, 7]
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types = [1, 1, 1, 1, 1, 1, 1]
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self.assertEqual(self.lmp.create_atoms(7, id=tags, type=types, x=x), 7)
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self.assertEqual(self.lmp.create_atoms(7, atomid=tags, atype=types, x=x), 7)
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nlocal = self.lmp.extract_global("nlocal")
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self.assertEqual(nlocal, 7)
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@ -647,7 +647,7 @@ class PythonNumpy(unittest.TestCase):
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tags = [1, 2, 3, 4, 5, 6, 7]
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types = [1, 1, 1, 1, 1, 1, 1]
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self.assertEqual(self.lmp.create_atoms(7, id=tags, type=types, x=x), 7)
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self.assertEqual(self.lmp.create_atoms(7, atomid=tags, atype=types, x=x), 7)
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nlocal = self.lmp.extract_global("nlocal")
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self.assertEqual(nlocal, 7)
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@ -680,7 +680,7 @@ class PythonNumpy(unittest.TestCase):
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tags = [1, 2, 3, 4, 5, 6, 7]
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types = [1, 1, 1, 1, 1, 1, 1]
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self.assertEqual(self.lmp.create_atoms(7, id=tags, type=types, x=x), 7)
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self.assertEqual(self.lmp.create_atoms(7, atomid=tags, atype=types, x=x), 7)
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nlocal = self.lmp.extract_global("nlocal")
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self.assertEqual(nlocal, 7)
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@ -733,7 +733,7 @@ class PythonNumpy(unittest.TestCase):
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types = [1, 1]
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self.assertEqual(self.lmp.create_atoms(2, id=None, type=types, x=x), 2)
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self.assertEqual(self.lmp.create_atoms(2, atomid=None, atype=types, x=x), 2)
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self.lmp.command("variable a atom x*x+y*y+z*z")
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a = self.lmp.numpy.extract_variable("a", "all", LMP_VAR_ATOM)
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self.assertIs(type(a), numpy.ndarray)
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@ -53,7 +53,7 @@ class PythonPyLammps(unittest.TestCase):
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types = [1, 1]
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self.assertEqual(self.pylmp.lmp.create_atoms(2, id=None, type=types, x=x), 2)
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self.assertEqual(self.pylmp.lmp.create_atoms(2, atomid=None, atype=types, x=x), 2)
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self.assertEqual(self.pylmp.system.natoms, 2)
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self.assertEqual(len(self.pylmp.atoms), 2)
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numpy.testing.assert_array_equal(self.pylmp.atoms[0].position, tuple(x[0:3]))
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