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Fixed remaining BibTeX entries, checked all entries in issue #2597

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This commit is contained in:
Karl Hammond
2022-08-13 13:45:39 -05:00
parent 1473f760f8
commit 1d89c3f5d7
15 changed files with 33 additions and 33 deletions
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2
src/EFF/atom_vec_electron.cpp
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@ -28,7 +28,7 @@ static const char cite_user_eff_package[] =
" author = {A. Jaramillo-Botero and J. Su and A. Qi and Goddard, III, W. A.},\n"
" title = {Large-Scale, Long-Term Nonadiabatic Electron Molecular Dynamics for Describing "
"Material Properties and Phenomena in Extreme Environments},\n"
" journal = {J.~Comp.~Chem.},\n"
" journal = {J.~Comp.\\ Chem.},\n"
" year = 2011,\n"
" volume = 32,\n"
" number = 3,\n"

20
src/EXTRA-FIX/fix_electron_stopping_fit.cpp
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@ -35,10 +35,10 @@ using namespace FixConst;
// ---------------------------------------------------------------------
static const char cite_fix_electron_stopping_fit_c[] =
"fix electron/stopping/fit command: doi:10.1063/1.5022471\n\n"
"fix electron/stopping/fit command: doi:10.1063/1.5022471, doi:10.1103/PhysRevB.102.024107\n\n"
"@Article{Stewart2018,\n"
" author = { J. A. Stewart and G. Brookman and P. Price and M. Franco and W. Ji and K. Hattar and R. Dingreville },\n"
" title = { Characterizing Single Isolated Radiation-Damage Events from Molecular Dynamics via Virtual Diffraction Methods },\n"
" author = {J. A. Stewart and G. Brookman and P. Price and M. Franco and W. Ji and K. Hattar and R. Dingreville},\n"
" title = {Characterizing Single Isolated Radiation-Damage Events from Molecular Dynamics via Virtual Diffraction Methods},\n"
" journal = {Journal of Applied Physics},\n"
" year = {2018},\n"
" volume = {123},\n"
@ -46,13 +46,13 @@ static const char cite_fix_electron_stopping_fit_c[] =
" pages = {165902}\n"
"}\n\n"
"@Article{Lee2020,\n"
" author = { C.W. Lee and J.A. Stewart and S.M. Foiles and R. Dingreville and A. Schleife },\n"
" title = { Multiscale simulations of electron and ion dynamics in self-irradiated silicon },\n"
" journal = { Physical Review B },\n"
" year = { 2020 },\n"
" volume = { 102 },\n"
" number = { 2 },\n"
" pages = { 024107 }\n"
" author = {C. W. Lee and J. A. Stewart and S. M. Foiles and R. Dingreville and A. Schleife },\n"
" title = {Multiscale Simulations of Electron and Ion Dynamics in Self-Irradiated Silicon},\n"
" journal = {Physical Review~B},\n"
" year = {2020},\n"
" volume = {102},\n"
" number = {2},\n"
" pages = {024107}\n"
"}\n\n";
// ---------------------------------------------------------------------

4
src/EXTRA-FIX/fix_pafi.cpp
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@ -43,8 +43,8 @@ static const char cite_fix_pafi_package[] =
"citation for fix pafi: doi:10.1103/PhysRevLett.120.135503\n\n"
"@article{SwinburneMarinica2018,\n"
"author={T. D. Swinburne and M. C. Marinica},\n"
"title={Unsupervised Calculation of Free Energy Barriers in Large "
"Crystalline Systems},\n"
"title={Unsupervised Calculation of Free Energy Barriers in Large\n"
" Crystalline Systems},\n"
"journal={Physical Review Letters},\n"
"volume={120},\n"
"number={13},\n"

2
src/EXTRA-FIX/fix_ti_spring.cpp
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@ -35,7 +35,7 @@ using namespace LAMMPS_NS;
using namespace FixConst;
static const char cite_fix_ti_spring[] =
"ti/spring command:\n\n"
"ti/spring command: doi:10.1016/j.commatsci.2015.10.050\n\n"
"@article{freitas2016,\n"
" author={Freitas, Rodrigo and Asta, Mark and de Koning, Maurice},\n"
" title={Nonequilibrium Free-Energy Calculation of Solids Using {LAMMPS}},\n"

2
src/EXTRA-FIX/fix_ttm_mod.cpp
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@ -51,7 +51,7 @@ static const char cite_fix_ttm_mod[] =
"fix ttm/mod command: doi:10.1088/0953-8984/26/47/475401, doi:10.1002/ctpp.201310025\n\n"
"@article{Pisarev2014,\n"
"author = {Pisarev, V. V. and Starikov, S. V.},\n"
"title = {{Atomistic Simulation of Ion Track Formation in {UO$_2$}.}},\n"
"title = {Atomistic Simulation of Ion Track Formation in {UO$_2$}.},\n"
"journal = {J.~Phys.\\ Condens.\\ Matter},\n"
"volume = {26},\n"
"number = {47},\n"

2
src/EXTRA-MOLECULE/dihedral_table_cut.cpp
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@ -36,7 +36,7 @@ using namespace LAMMPS_NS;
using namespace MathConst;
static const char cite_dihedral_tablecut[] =
"dihedral_style table/cut command: doi:10.1021/acs.jctc.7b01229\n\n"
"dihedral_style table/cut command: doi:10.1021/acs.jctc.7b01229\n\n"
"@Article{Salerno17,\n"
" author = {K. M. Salerno and N. Bernstein},\n"
" title = {Persistence Length, End-to-End Distance, and Structure of Coarse-Grained Polymers},\n"

4
src/EXTRA-PAIR/pair_momb.cpp
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@ -34,8 +34,8 @@ using namespace LAMMPS_NS;
static const char cite_momb[] =
"Pair style momb: doi:10.1021/jp412098n\n\n"
"@Article{pair_momb_2015,\n"
"title = {A Force Field for Describing the Polyvinylpyrrolidone-Mediated"
" Solution-Phase Synthesis of Shape-Selective {Ag} Nanoparticles},\n"
"title = {A Force Field for Describing the Polyvinylpyrrolidone-Mediated\n"
" Solution-Phase Synthesis of Shape-Selective {Ag} Nanoparticles},\n"
"volume = {118},\n"
"number = {6},\n"
"url = {https://doi.org/10.1021/jp412098n},\n"

2
src/MANIFOLD/fix_nve_manifold_rattle.cpp
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@ -55,7 +55,7 @@ using namespace user_manifold;
enum { CONST, EQUAL }; // For treating the variables.
static const char* cite_fix_nve_manifold_rattle =
"fix nve/manifold/rattle command:\n\n"
"fix nve/manifold/rattle command: doi:10.1016/j.bpj.2016.02.017\n\n"
"@article{paquay-2016,\n"
" author = {Paquay, Stefan and Kusters, Remy},\n"
" doi = {10.1016/j.bpj.2016.02.017},\n"

2
src/MANIFOLD/fix_nvt_manifold_rattle.cpp
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@ -59,7 +59,7 @@ enum {NOBIAS,BIAS};
static const char* cite_fix_nvt_manifold_rattle =
"fix nvt/manifold/rattle command:\n\n"
"fix nvt/manifold/rattle command: doi:10.1016/j.bpj.2016.02.017\n\n"
"@article{paquay-2016,\n"
" author = {Paquay, Stefan and Kusters, Remy},\n"
" doi = {10.1016/j.bpj.2016.02.017},\n"

6
src/MANYBODY/pair_edip_multi.cpp
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@ -46,14 +46,14 @@ static const char cite_pair_edip[] =
"@article{cjiang2012\n"
" author = {Jian, Chao and Morgan, Dane, and Szlufarska, Izabella},\n"
" title = {Carbon Tri-Interstitial Defect: {A} Model for {D$_{\mathrm{II}}$} Center},\n"
" journal = {Phys.\ Rev.~B},\n"
" journal = {Phys.\\ Rev.~B},\n"
" volume = {86},\n"
" pages = {144118},\n"
" year = {2012},\n"
"}\n\n"
"@article{lpizzagalli2010,\n"
" author = {G. Lucas, M. Bertolus, and L. Pizzagalli},\n"
" journal = {J.~Phys.\ Condens.\ Matter},\n"
" author = {G. Lucas and M. Bertolus and L. Pizzagalli},\n"
" journal = {J.~Phys.\\ Condens.\\ Matter},\n"
" volume = {22},\n"
" number = 3,\n"
" pages = {035802},\n"

2
src/MANYBODY/pair_local_density.cpp
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@ -37,7 +37,7 @@ using namespace LAMMPS_NS;
#define MAXLINE 1024
static const char cite_pair_local_density[] =
"pair_style local/density command: doi:10.1063/1.4958629, doi:10.1021/acs.jpcb.7b12446\n\n"
"pair_style local/density command: doi:10.1063/1.4958629, doi:10.1021/acs.jpcb.7b12446\n\n"
"@Article{Sanyal16,\n"
" author = {T. Sanyal and M. Scott Shell},\n"
" title = {Coarse-Grained Models Using Local-Density Potentials Optimized With the Relative Entropy: {A}pplication to Implicit Solvation},\n"

8
src/PTM/compute_ptm_atom.cpp
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@ -49,10 +49,10 @@ using namespace LAMMPS_NS;
static const char cite_user_ptm_package[] =
"PTM package: doi:10.1088/0965-0393/24/5/055007\n\n"
"@Article{larsen2016ptm,\n"
" author={Larsen, Peter Mahler and Schmidt, S{\\o}ren and Schi{\\o}tz, "
"Jakob},\n"
" title={Robust Structural Identification via Polyhedral Template "
"matching},\n"
" author={Larsen, Peter Mahler and Schmidt, S{\\o}ren and\n"
" Schi{\\o}tz, Jakob},\n"
" title={Robust Structural Identification via Polyhedral Template\n"
" Matching},\n"
" journal={Model.\\ Simulat.\\ Mater.\\ Sci.\\ Eng.},\n"
" year={2016},\n"
" number={5},\n"

2
src/REACTION/fix_bond_react.cpp
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@ -57,7 +57,7 @@ using namespace FixConst;
using namespace MathConst;
static const char cite_fix_bond_react[] =
"fix bond/react: reacter.org doi:10.1016/j.polymer.2017.09.038 doi:10.1021/acs.macromol.0c02012\n\n"
"fix bond/react: reacter.org doi:10.1016/j.polymer.2017.09.038, doi:10.1021/acs.macromol.0c02012\n\n"
"@Article{Gissinger17,\n"
" author = {J. R. Gissinger and B. D. Jensen and K. E. Wise},\n"
" title = {Modeling Chemical Reactions in Classical Molecular Dynamics Simulations},\n"

2
src/SPIN/min_spin_lbfgs.cpp
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@ -43,7 +43,7 @@ using namespace LAMMPS_NS;
using namespace MathConst;
static const char cite_minstyle_spin_lbfgs[] =
"min_style spin/lbfgs command:\n\n"
"min_style spin/lbfgs command: doi:10.48550/arXiv.1904.02669\n\n"
"@article{ivanov2019fast,\n"
"title={Fast and Robust Algorithm for the Minimisation of the Energy of\n"
" Spin Systems},\n"

6
src/SPIN/neb_spin.cpp
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@ -50,9 +50,9 @@ using namespace LAMMPS_NS;
static const char cite_neb_spin[] =
"neb/spin command: doi:10.1016/j.cpc.2015.07.001\n\n"
"@article{bessarab2015method,\n"
"title={Method for finding mechanism and activation energy of "
" magnetic transitions, applied to skyrmion and antivortex "
" annihilation},\n"
"title={Method for Finding Mechanism and Activation Energy of\n"
" Magnetic Transitions, Applied to Skyrmion and Antivortex\n"
" Annihilation},\n"
"author={Bessarab, P. F. and Uzdin, V. M. and J{\'o}nsson, H.},\n"
"journal={Computer Physics Communications},\n"
"volume={196},\n"