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Merge pull request #2335 from rbberger/doc_updates

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Update documentation pages headings and update style check tool to detect missing index entries.
This commit is contained in:
Axel Kohlmeyer
2020-09-02 15:46:10 -04:00
committed by GitHub
parent 80519cd109 8def5844c8
commit 2cd0e9edc4
191 changed files with 916 additions and 866 deletions
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12
doc/src/angle_charmm.rst
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@ -1,16 +1,12 @@
.. index:: angle_style charmm
.. index:: angle_style charmm/intel
.. index:: angle_style charmm/kk
.. index:: angle_style charmm/omp
angle_style charmm command
==========================
angle_style charmm/intel command
================================
angle_style charmm/kk command
=============================
angle_style charmm/omp command
==============================
Accelerator Variants: *charmm/intel*, *charmm/kk*, *charmm/omp*
Syntax
""""""

9
doc/src/angle_class2.rst
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@ -1,13 +1,12 @@
.. index:: angle_style class2
.. index:: angle_style class2/kk
.. index:: angle_style class2/omp
.. index:: angle_style class2/p6
angle_style class2 command
==========================
angle_style class2/kk command
=============================
angle_style class2/omp command
==============================
Accelerator Variants: *class2/kk*, *class2/omp*
angle_style class2/p6 command
=============================

8
doc/src/angle_cosine.rst
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@ -1,13 +1,11 @@
.. index:: angle_style cosine
.. index:: angle_style cosine/omp
.. index:: angle_style cosine/kk
angle_style cosine command
==========================
angle_style cosine/omp command
==============================
angle_style cosine/kk command
=============================
Accelerator Variants: *cosine/omp*, *cosine/kk*
Syntax
""""""

4
doc/src/angle_cosine_delta.rst
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@ -1,10 +1,10 @@
.. index:: angle_style cosine/delta
.. index:: angle_style cosine/delta/omp
angle_style cosine/delta command
================================
angle_style cosine/delta/omp command
====================================
Accelerator Variants: *cosine/delta/omp*
Syntax
""""""

4
doc/src/angle_cosine_periodic.rst
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@ -1,10 +1,10 @@
.. index:: angle_style cosine/periodic
.. index:: angle_style cosine/periodic/omp
angle_style cosine/periodic command
===================================
angle_style cosine/periodic/omp command
=======================================
Accelerator Variants: *cosine/periodic/omp*
Syntax
""""""

6
doc/src/angle_cosine_shift.rst
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@ -1,10 +1,10 @@
.. index:: angle_style cosine/shift
.. index:: angle_style cosine/shift/omp
angle_style cosine/shift command
=================================
================================
angle_style cosine/shift/omp command
====================================
Accelerator Variants: *cosine/shift/omp*
Syntax
""""""

4
doc/src/angle_cosine_shift_exp.rst
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@ -1,10 +1,10 @@
.. index:: angle_style cosine/shift/exp
.. index:: angle_style cosine/shift/exp/omp
angle_style cosine/shift/exp command
====================================
angle_style cosine/shift/exp/omp command
========================================
Accelerator Variants: *cosine/shift/exp/omp*
Syntax
""""""

4
doc/src/angle_cosine_squared.rst
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@ -1,10 +1,10 @@
.. index:: angle_style cosine/squared
.. index:: angle_style cosine/squared/omp
angle_style cosine/squared command
==================================
angle_style cosine/squared/omp command
======================================
Accelerator Variants: *cosine/squared/omp*
Syntax
""""""

2
doc/src/angle_cross.rst
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@ -1,7 +1,7 @@
.. index:: angle_style cross
angle_style cross command
==========================
=========================
Syntax
""""""

4
doc/src/angle_dipole.rst
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@ -1,10 +1,10 @@
.. index:: angle_style dipole
.. index:: angle_style dipole/omp
angle_style dipole command
==========================
angle_style dipole/omp command
==============================
Accelerator Variants: *dipole/omp*
Syntax
""""""

4
doc/src/angle_fourier.rst
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@ -1,10 +1,10 @@
.. index:: angle_style fourier
.. index:: angle_style fourier/omp
angle_style fourier command
===========================
angle_style fourier/omp command
===============================
Accelerator Variants: *fourier/omp*
Syntax
""""""

4
doc/src/angle_fourier_simple.rst
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@ -1,10 +1,10 @@
.. index:: angle_style fourier/simple
.. index:: angle_style fourier/simple/omp
angle_style fourier/simple command
==================================
angle_style fourier/simple/omp command
======================================
Accelerator Variants: *fourier/simple/omp*
Syntax
""""""

12
doc/src/angle_harmonic.rst
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@ -1,16 +1,12 @@
.. index:: angle_style harmonic
.. index:: angle_style harmonic/intel
.. index:: angle_style harmonic/kk
.. index:: angle_style harmonic/omp
angle_style harmonic command
============================
angle_style harmonic/intel command
==================================
angle_style harmonic/kk command
===============================
angle_style harmonic/omp command
================================
Accelerator Variants: *harmonic/intel*, *harmonic/kk*, *harmonic/omp*
Syntax
""""""

4
doc/src/angle_quartic.rst
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@ -1,10 +1,10 @@
.. index:: angle_style quartic
.. index:: angle_style quartic/omp
angle_style quartic command
===========================
angle_style quartic/omp command
===============================
Accelerator Variants: *quartic/omp*
Syntax
""""""

4
doc/src/angle_sdk.rst
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@ -1,10 +1,10 @@
.. index:: angle_style sdk
.. index:: angle_style sdk/omp
angle_style sdk command
=======================
angle_style sdk/omp command
===========================
Accelerator Variants: *sdk/omp*
Syntax
""""""

4
doc/src/angle_table.rst
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@ -1,10 +1,10 @@
.. index:: angle_style table
.. index:: angle_style table/omp
angle_style table command
=========================
angle_style table/omp command
=============================
Accelerator Variants: *table/omp*
Syntax
""""""

8
doc/src/bond_class2.rst
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@ -1,13 +1,11 @@
.. index:: bond_style class2
.. index:: bond_style class2/omp
.. index:: bond_style class2/kk
bond_style class2 command
=========================
bond_style class2/omp command
=============================
bond_style class2/kk command
============================
Accelerator Variants: *class2/omp*, *class2/kk*
Syntax
""""""

12
doc/src/bond_fene.rst
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@ -1,16 +1,12 @@
.. index:: bond_style fene
.. index:: bond_style fene/intel
.. index:: bond_style fene/kk
.. index:: bond_style fene/omp
bond_style fene command
=======================
bond_style fene/intel command
=============================
bond_style fene/kk command
==========================
bond_style fene/omp command
===========================
Accelerator Variants: *fene/intel*, *fene/kk*, *fene/omp*
Syntax
""""""

4
doc/src/bond_fene_expand.rst
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@ -1,10 +1,10 @@
.. index:: bond_style fene/expand
.. index:: bond_style fene/expand/omp
bond_style fene/expand command
==============================
bond_style fene/expand/omp command
==================================
Accelerator Variants: *fene/expand/omp*
Syntax
""""""

4
doc/src/bond_gromos.rst
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@ -1,10 +1,10 @@
.. index:: bond_style gromos
.. index:: bond_style gromos/omp
bond_style gromos command
=========================
bond_style gromos/omp command
=============================
Accelerator Variants: *gromos/omp*
Syntax
""""""

12
doc/src/bond_harmonic.rst
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@ -1,16 +1,12 @@
.. index:: bond_style harmonic
.. index:: bond_style harmonic/intel
.. index:: bond_style harmonic/kk
.. index:: bond_style harmonic/omp
bond_style harmonic command
===========================
bond_style harmonic/intel command
=================================
bond_style harmonic/kk command
==============================
bond_style harmonic/omp command
===============================
Accelerator Variants: *harmonic/intel*, *harmonic/kk*, *harmonic/omp*
Syntax
""""""

4
doc/src/bond_harmonic_shift.rst
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@ -1,10 +1,10 @@
.. index:: bond_style harmonic/shift
.. index:: bond_style harmonic/shift/omp
bond_style harmonic/shift command
=================================
bond_style harmonic/shift/omp command
=====================================
Accelerator Variants: *harmonic/shift/omp*
Syntax
""""""

4
doc/src/bond_harmonic_shift_cut.rst
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@ -1,10 +1,10 @@
.. index:: bond_style harmonic/shift/cut
.. index:: bond_style harmonic/shift/cut/omp
bond_style harmonic/shift/cut command
=====================================
bond_style harmonic/shift/cut/omp command
=========================================
Accelerator Variants: *harmonic/shift/cut/omp*
Syntax
""""""

4
doc/src/bond_morse.rst
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@ -1,10 +1,10 @@
.. index:: bond_style morse
.. index:: bond_style morse/omp
bond_style morse command
========================
bond_style morse/omp command
============================
Accelerator Variants: *morse/omp*
Syntax
""""""

4
doc/src/bond_nonlinear.rst
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@ -1,10 +1,10 @@
.. index:: bond_style nonlinear
.. index:: bond_style nonlinear/omp
bond_style nonlinear command
============================
bond_style nonlinear/omp command
================================
Accelerator Variants: *nonlinear/omp*
Syntax
""""""

2
doc/src/bond_oxdna.rst
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@ -1,4 +1,6 @@
.. index:: bond_style oxdna/fene
.. index:: bond_style oxdna2/fene
.. index:: bond_style oxrna2/fene
bond_style oxdna/fene command
=============================

4
doc/src/bond_quartic.rst
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@ -1,10 +1,10 @@
.. index:: bond_style quartic
.. index:: bond_style quartic/omp
bond_style quartic command
==========================
bond_style quartic/omp command
==============================
Accelerator Variants: *quartic/omp*
Syntax
""""""

2
doc/src/bond_special.rst
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@ -1,7 +1,7 @@
.. index:: bond_style special
bond_style special command
=================================
==========================
Syntax
""""""

4
doc/src/bond_table.rst
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@ -1,10 +1,10 @@
.. index:: bond_style table
.. index:: bond_style table/omp
bond_style table command
========================
bond_style table/omp command
============================
Accelerator Variants: *table/omp*
Syntax
""""""

2
doc/src/compute_cluster_atom.rst
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@ -1,4 +1,6 @@
.. index:: compute cluster/atom
.. index:: compute fragment/atom
.. index:: compute aggregate/atom
compute cluster/atom command
============================

4
doc/src/compute_coord_atom.rst
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@ -1,10 +1,10 @@
.. index:: compute coord/atom
.. index:: compute coord/atom/kk
compute coord/atom command
==========================
compute coord/atom/kk command
===================================
Accelerator Variants: *coord/atom/kk*
Syntax
""""""

2
doc/src/compute_mesont.rst
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@ -1,7 +1,7 @@
.. index:: compute mesont
compute mesont command
==========================
======================
Syntax
""""""

4
doc/src/compute_orientorder_atom.rst
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@ -1,10 +1,10 @@
.. index:: compute orientorder/atom
.. index:: compute orientorder/atom/kk
compute orientorder/atom command
================================
compute orientorder/atom/kk command
===================================
Accelerator Variants: *orientorder/atom/kk*
Syntax
""""""

1
doc/src/compute_reduce.rst
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@ -1,4 +1,5 @@
.. index:: compute reduce
.. index:: compute reduce/region
compute reduce command
======================

2
doc/src/compute_smd_ulsph_effm.rst
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@ -1,7 +1,7 @@
.. index:: compute smd/ulsph/effm
compute smd/ulsph/effm command
================================
==============================
Syntax
""""""

3
doc/src/compute_sna_atom.rst
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@ -1,4 +1,7 @@
.. index:: compute sna/atom
.. index:: compute snad/atom
.. index:: compute snav/atom
.. index:: compute snap
compute sna/atom command
========================

2
doc/src/compute_sph_e_atom.rst
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@ -1,7 +1,7 @@
.. index:: compute sph/e/atom
compute sph/e/atom command
===========================
==========================
Syntax
""""""

2
doc/src/compute_sph_rho_atom.rst
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@ -1,7 +1,7 @@
.. index:: compute sph/rho/atom
compute sph/rho/atom command
=============================
============================
Syntax
""""""

2
doc/src/compute_sph_t_atom.rst
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@ -1,7 +1,7 @@
.. index:: compute sph/t/atom
compute sph/t/atom command
===========================
==========================
Syntax
""""""

1
doc/src/compute_stress_atom.rst
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@ -1,4 +1,5 @@
.. index:: compute stress/atom
.. index:: compute centroid/stress/atom
compute stress/atom command
===========================

1
doc/src/compute_stress_mop.rst
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@ -1,4 +1,5 @@
.. index:: compute stress/mop
.. index:: compute stress/mop/profile
compute stress/mop command
==========================

4
doc/src/compute_tally.rst
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@ -1,4 +1,8 @@
.. index:: compute force/tally
.. index:: compute heat/flux/tally
.. index:: compute pe/tally
.. index:: compute pe/mol/tally
.. index:: compute stress/tally
compute force/tally command
===========================

4
doc/src/compute_temp.rst
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@ -1,10 +1,10 @@
.. index:: compute temp
.. index:: compute temp/kk
compute temp command
====================
compute temp/kk command
=======================
Accelerator Variants: *temp/kk*
Syntax
""""""

13
doc/src/dihedral_charmm.rst
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@ -1,16 +1,13 @@
.. index:: dihedral_style charmm
.. index:: dihedral_style charmm/intel
.. index:: dihedral_style charmm/kk
.. index:: dihedral_style charmm/omp
.. index:: dihedral_style charmmfsw
dihedral_style charmm command
=============================
dihedral_style charmm/intel command
===================================
dihedral_style charmm/kk command
================================
dihedral_style charmm/omp command
=================================
Accelerator Variants: *charmm/intel*, *charmm/kk*, *charmm/omp*
dihedral_style charmmfsw command
================================

8
doc/src/dihedral_class2.rst
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@ -1,13 +1,11 @@
.. index:: dihedral_style class2
.. index:: dihedral_style class2/omp
.. index:: dihedral_style class2/kk
dihedral_style class2 command
=============================
dihedral_style class2/omp command
=================================
dihedral_style class2/kk command
================================
Accelerator Variants: *class2/omp*, *class2/kk*
Syntax
""""""

4
doc/src/dihedral_cosine_shift_exp.rst
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@ -1,10 +1,10 @@
.. index:: dihedral_style cosine/shift/exp
.. index:: dihedral_style cosine/shift/exp/omp
dihedral_style cosine/shift/exp command
=======================================
dihedral_style cosine/shift/exp/omp command
===========================================
Accelerator Variants: *cosine/shift/exp/omp*
Syntax
""""""

8
doc/src/dihedral_fourier.rst
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@ -1,13 +1,11 @@
.. index:: dihedral_style fourier
.. index:: dihedral_style fourier/intel
.. index:: dihedral_style fourier/omp
dihedral_style fourier command
==============================
dihedral_style fourier/intel command
====================================
dihedral_style fourier/omp command
==================================
Accelerator Variants: *fourier/intel*, *fourier/omp*
Syntax
""""""

12
doc/src/dihedral_harmonic.rst
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@ -1,16 +1,12 @@
.. index:: dihedral_style harmonic
.. index:: dihedral_style harmonic/intel
.. index:: dihedral_style harmonic/kk
.. index:: dihedral_style harmonic/omp
dihedral_style harmonic command
===============================
dihedral_style harmonic/intel command
=====================================
dihedral_style harmonic/kk command
==================================
dihedral_style harmonic/omp command
===================================
Accelerator Variants: *harmonic/intel*, *harmonic/kk*, *harmonic/omp*
Syntax
""""""

4
doc/src/dihedral_helix.rst
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@ -1,10 +1,10 @@
.. index:: dihedral_style helix
.. index:: dihedral_style helix/omp
dihedral_style helix command
============================
dihedral_style helix/omp command
================================
Accelerator Variants: *helix/omp*
Syntax
""""""

4
doc/src/dihedral_multi_harmonic.rst
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@ -1,10 +1,10 @@
.. index:: dihedral_style multi/harmonic
.. index:: dihedral_style multi/harmonic/omp
dihedral_style multi/harmonic command
=====================================
dihedral_style multi/harmonic/omp command
=========================================
Accelerator Variants: *multi/harmonic/omp*
Syntax
""""""

6
doc/src/dihedral_nharmonic.rst
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@ -1,10 +1,10 @@
.. index:: dihedral_style nharmonic
.. index:: dihedral_style nharmonic/omp
dihedral_style nharmonic command
=================================
================================
dihedral_style nharmonic/omp command
=====================================
Accelerator Variants: *nharmonic/omp*
Syntax
""""""

12
doc/src/dihedral_opls.rst
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@ -1,16 +1,12 @@
.. index:: dihedral_style opls
.. index:: dihedral_style opls/intel
.. index:: dihedral_style opls/kk
.. index:: dihedral_style opls/omp
dihedral_style opls command
===========================
dihedral_style opls/intel command
=================================
dihedral_style opls/kk command
==============================
dihedral_style opls/omp command
===============================
Accelerator Variants: *opls/intel*, *opls/kk*, *opls/omp*
Syntax
""""""

4
doc/src/dihedral_quadratic.rst
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@ -1,10 +1,10 @@
.. index:: dihedral_style quadratic
.. index:: dihedral_style quadratic/omp
dihedral_style quadratic command
================================
dihedral_style quadratic/omp command
====================================
Accelerator Variants: *quadratic/omp*
Syntax
""""""

4
doc/src/dihedral_table.rst
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@ -1,10 +1,10 @@
.. index:: dihedral_style table
.. index:: dihedral_style table/omp
dihedral_style table command
============================
dihedral_style table/omp command
================================
Accelerator Variants: *table/omp*
Syntax
""""""

2
doc/src/dihedral_zero.rst
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@ -1,7 +1,7 @@
.. index:: dihedral_style zero
dihedral_style zero command
============================
===========================
Syntax
""""""

1
doc/src/fix_ave_histo.rst
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@ -1,4 +1,5 @@
.. index:: fix ave/histo
.. index:: fix ave/histo/weight
fix ave/histo command
=====================

1
doc/src/fix_bond_create.rst
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@ -1,4 +1,5 @@
.. index:: fix bond/create
.. index:: fix bond/create/angle
fix bond/create command
=======================

4
doc/src/fix_deform.rst
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@ -1,10 +1,10 @@
.. index:: fix deform
.. index:: fix deform/kk
fix deform command
==================
fix deform/kk command
=====================
Accelerator Variants: *deform/kk*
Syntax
""""""

4
doc/src/fix_dpd_energy.rst
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@ -1,10 +1,10 @@
.. index:: fix dpd/energy
.. index:: fix dpd/energy/kk
fix dpd/energy command
======================
fix dpd/energy/kk command
=========================
Accelerator Variants: *dpd/energy/kk*
Syntax
""""""

1
doc/src/fix_dpd_source.rst
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@ -1,4 +1,5 @@
.. index:: fix edpd/source
.. index:: fix tdpd/source
fix edpd/source command
=======================

1
doc/src/fix_drude_transform.rst
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@ -1,4 +1,5 @@
.. index:: fix drude/transform/direct
.. index:: fix drude/transform/inverse
fix drude/transform/direct command
==================================

4
doc/src/fix_enforce2d.rst
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@ -1,10 +1,10 @@
.. index:: fix enforce2d
.. index:: fix enforce2d/kk
fix enforce2d command
=====================
fix enforce2d/kk command
========================
Accelerator Variants: *enforce2d/kk*
Syntax
""""""

4
doc/src/fix_eos_table_rx.rst
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@ -1,10 +1,10 @@
.. index:: fix eos/table/rx
.. index:: fix eos/table/rx/kk
fix eos/table/rx command
========================
fix eos/table/rx/kk command
===========================
Accelerator Variants: *eos/table/rx/kk*
Syntax
""""""

4
doc/src/fix_freeze.rst
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@ -1,10 +1,10 @@
.. index:: fix freeze
.. index:: fix freeze/kk
fix freeze command
==================
fix freeze/kk command
=====================
Accelerator Variants: *freeze/kk*
Syntax
""""""

8
doc/src/fix_gravity.rst
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@ -1,13 +1,11 @@
.. index:: fix gravity
.. index:: fix gravity/omp
.. index:: fix gravity/kk
fix gravity command
===================
fix gravity/omp command
=======================
fix gravity/kk command
======================
Accelerator Variants: *gravity/omp*, *gravity/kk*
Syntax
""""""

4
doc/src/fix_langevin.rst
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@ -1,10 +1,10 @@
.. index:: fix langevin
.. index:: fix langevin/kk
fix langevin command
====================
fix langevin/kk command
=======================
Accelerator Variants: *langevin/kk*
Syntax
""""""

5
doc/src/fix_momentum.rst
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@ -1,10 +1,11 @@
.. index:: fix momentum
.. index:: fix momentum/kk
.. index:: fix momentum/chunk
fix momentum command
====================
fix momentum/kk command
=======================
Accelerator Variants: *momentum/kk*
fix momentum/chunk command
==========================

2
doc/src/fix_mvv_dpd.rst
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@ -1,4 +1,6 @@
.. index:: fix mvv/dpd
.. index:: fix mvv/edpd
.. index:: fix mvv/tdpd
fix mvv/dpd command
===================

34
doc/src/fix_nh.rst
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@ -1,37 +1,29 @@
.. index:: fix nvt
.. index:: fix nvt/intel
.. index:: fix nvt/kk
.. index:: fix nvt/omp
.. index:: fix npt
.. index:: fix npt/intel
.. index:: fix npt/kk
.. index:: fix npt/omp
.. index:: fix nph
.. index:: fix nph/kk
.. index:: fix nph/omp
fix nvt command
===============
fix nvt/intel command
=====================
fix nvt/kk command
==================
fix nvt/omp command
===================
Accelerator Variants: *nvt/intel*, *nvt/kk*, *nvt/omp*
fix npt command
===============
fix npt/intel command
=====================
fix npt/kk command
==================
fix npt/omp command
===================
Accelerator Variants: *npt/intel*, *npt/kk*, *npt/omp*
fix nph command
===============
fix nph/kk command
==================
fix nph/omp command
===================
Accelerator Variants: *nph/kk*, *nph/omp*
Syntax
""""""

2
doc/src/fix_nh_eff.rst
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@ -1,4 +1,6 @@
.. index:: fix nvt/eff
.. index:: fix npt/eff
.. index:: fix nph/eff
fix nvt/eff command
===================

1
doc/src/fix_nh_uef.rst
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@ -1,4 +1,5 @@
.. index:: fix nvt/uef
.. index:: fix npt/uef
fix nvt/uef command
===================

4
doc/src/fix_nph_asphere.rst
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@ -1,10 +1,10 @@
.. index:: fix nph/asphere
.. index:: fix nph/asphere/omp
fix nph/asphere command
=======================
fix nph/asphere/omp command
===========================
Accelerator Variants: *nph/asphere/omp*
Syntax
""""""

4
doc/src/fix_nph_sphere.rst
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@ -1,10 +1,10 @@
.. index:: fix nph/sphere
.. index:: fix nph/sphere/omp
fix nph/sphere command
======================
fix nph/sphere/omp command
==========================
Accelerator Variants: *nph/sphere/omp*
Syntax
""""""

4
doc/src/fix_nphug.rst
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@ -1,10 +1,10 @@
.. index:: fix nphug
.. index:: fix nphug/omp
fix nphug command
=================
fix nphug/omp command
=====================
Accelerator Variants: *nphug/omp*
Syntax
""""""

4
doc/src/fix_npt_asphere.rst
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@ -1,10 +1,10 @@
.. index:: fix npt/asphere
.. index:: fix npt/asphere/omp
fix npt/asphere command
=======================
fix npt/asphere/omp command
===========================
Accelerator Variants: *npt/asphere/omp*
Syntax
""""""

4
doc/src/fix_npt_sphere.rst
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@ -1,10 +1,10 @@
.. index:: fix npt/sphere
.. index:: fix npt/sphere/omp
fix npt/sphere command
======================
fix npt/sphere/omp command
==========================
Accelerator Variants: *npt/sphere/omp*
Syntax
""""""

2
doc/src/fix_numdiff.rst
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@ -1,7 +1,7 @@
.. index:: fix numdiff
fix numdiff command
====================
===================
Syntax
""""""

12
doc/src/fix_nve.rst
View File

@ -1,16 +1,12 @@
.. index:: fix nve
.. index:: fix nve/intel
.. index:: fix nve/kk
.. index:: fix nve/omp
fix nve command
===============
fix nve/intel command
=====================
fix nve/kk command
==================
fix nve/omp command
===================
Accelerator Variants: *nve/intel*, *nve/kk*, *nve/omp*
Syntax
""""""

4
doc/src/fix_nve_asphere.rst
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@ -1,10 +1,10 @@
.. index:: fix nve/asphere
.. index:: fix nve/asphere/intel
fix nve/asphere command
=======================
fix nve/asphere/intel command
=============================
Accelerator Variants: *nve/asphere/intel*
Syntax
""""""

8
doc/src/fix_nve_sphere.rst
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@ -1,13 +1,11 @@
.. index:: fix nve/sphere
.. index:: fix nve/sphere/omp
.. index:: fix nve/sphere/kk
fix nve/sphere command
======================
fix nve/sphere/omp command
==========================
fix nve/sphere/kk command
=========================
Accelerator Variants: *nve/sphere/omp*, *nve/sphere/kk*
Syntax
""""""

4
doc/src/fix_nvt_asphere.rst
View File

@ -1,10 +1,10 @@
.. index:: fix nvt/asphere
.. index:: fix nvt/asphere/omp
fix nvt/asphere command
=======================
fix nvt/asphere/omp command
===========================
Accelerator Variants: *nvt/asphere/omp*
Syntax
""""""

8
doc/src/fix_nvt_sllod.rst
View File

@ -1,13 +1,11 @@
.. index:: fix nvt/sllod
.. index:: fix nvt/sllod/intel
.. index:: fix nvt/sllod/omp
fix nvt/sllod command
=====================
fix nvt/sllod/intel command
===========================
fix nvt/sllod/omp command
=========================
Accelerator Variants: *nvt/sllod/intel*, *nvt/sllod/omp*
Syntax
""""""

4
doc/src/fix_nvt_sphere.rst
View File

@ -1,10 +1,10 @@
.. index:: fix nvt/sphere
.. index:: fix nvt/sphere/omp
fix nvt/sphere command
======================
fix nvt/sphere/omp command
==========================
Accelerator Variants: *nvt/sphere/omp*
Syntax
""""""

1
doc/src/fix_orient.rst
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@ -1,4 +1,5 @@
.. index:: fix orient/fcc
.. index:: fix orient/bcc
fix orient/fcc command
======================

4
doc/src/fix_property_atom.rst
View File

@ -1,10 +1,10 @@
.. index:: fix property/atom
.. index:: fix property/atom/kk
fix property/atom command
=========================
fix property/atom/kk command
============================
Accelerator Variants: *property/atom/kk*
Syntax
""""""

4
doc/src/fix_qeq.rst
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@ -1,4 +1,8 @@
.. index:: fix qeq/point
.. index:: fix qeq/shielded
.. index:: fix qeq/slater
.. index:: fix qeq/dynamic
.. index:: fix qeq/fire
fix qeq/point command
=====================

4
doc/src/fix_qeq_comb.rst
View File

@ -1,10 +1,10 @@
.. index:: fix qeq/comb
.. index:: fix qeq/comb/omp
fix qeq/comb command
====================
fix qeq/comb/omp command
========================
Accelerator Variants: *qeq/comb/omp*
Syntax
""""""

8
doc/src/fix_qeq_reax.rst
View File

@ -1,13 +1,11 @@
.. index:: fix qeq/reax
.. index:: fix qeq/reax/kk
.. index:: fix qeq/reax/omp
fix qeq/reax command
====================
fix qeq/reax/kk command
=======================
fix qeq/reax/omp command
========================
Accelerator Variants: *qeq/reax/kk*, *qeq/reax/omp*
Syntax
""""""

4
doc/src/fix_reaxc_bonds.rst
View File

@ -1,10 +1,10 @@
.. index:: fix reax/c/bonds
.. index:: fix reax/c/bonds/kk
fix reax/c/bonds command
========================
fix reax/c/bonds/kk command
===========================
Accelerator Variants: *reax/c/bonds/kk*
Syntax
""""""

4
doc/src/fix_reaxc_species.rst
View File

@ -1,10 +1,10 @@
.. index:: fix reax/c/species
.. index:: fix reax/c/species/kk
fix reax/c/species command
==========================
fix reax/c/species/kk command
=============================
Accelerator Variants: *reax/c/species/kk*
Syntax
""""""

33
doc/src/fix_rigid.rst
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@ -1,40 +1,49 @@
.. index:: fix rigid
.. index:: fix rigid/omp
.. index:: fix rigid/nve
.. index:: fix rigid/nve/omp
.. index:: fix rigid/nvt
.. index:: fix rigid/nvt/omp
.. index:: fix rigid/npt
.. index:: fix rigid/npt/omp
.. index:: fix rigid/nph
.. index:: fix rigid/nph/omp
.. index:: fix rigid/small
.. index:: fix rigid/small/omp
.. index:: fix rigid/nve/small
.. index:: fix rigid/nvt/small
.. index:: fix rigid/npt/small
.. index:: fix rigid/nph/small
fix rigid command
=================
fix rigid/omp command
=====================
Accelerator Variants: *rigid/omp*
fix rigid/nve command
=====================
fix rigid/nve/omp command
=========================
Accelerator Variants: *rigid/nve/omp*
fix rigid/nvt command
=====================
fix rigid/nvt/omp command
=========================
Accelerator Variants: *rigid/nvt/omp*
fix rigid/npt command
=====================
fix rigid/npt/omp command
=========================
Accelerator Variants: *rigid/npt/omp*
fix rigid/nph command
=====================
fix rigid/nph/omp command
=========================
Accelerator Variants: *rigid/nph/omp*
fix rigid/small command
=======================
fix rigid/small/omp command
===========================
Accelerator Variants: *rigid/small/omp*
fix rigid/nve/small command
===========================

4
doc/src/fix_rx.rst
View File

@ -1,10 +1,10 @@
.. index:: fix rx
.. index:: fix rx/kk
fix rx command
==============
fix rx/kk command
=================
Accelerator Variants: *rx/kk*
Syntax
""""""

5
doc/src/fix_setforce.rst
View File

@ -1,10 +1,11 @@
.. index:: fix setforce
.. index:: fix setforce/kk
.. index:: fix setforce/spin
fix setforce command
====================
fix setforce/kk command
=======================
Accelerator Variants: *setforce/kk*
fix setforce/spin command
=========================

1
doc/src/fix_shake.rst
View File

@ -1,4 +1,5 @@
.. index:: fix shake
.. index:: fix rattle
fix shake command
=================

4
doc/src/fix_shardlow.rst
View File

@ -1,10 +1,10 @@
.. index:: fix shardlow
.. index:: fix shardlow/kk
fix shardlow command
====================
fix shardlow/kk command
=======================
Accelerator Variants: *shardlow/kk*
Syntax
""""""

2
doc/src/fix_smd_integrate_ulsph.rst
View File

@ -1,7 +1,7 @@
.. index:: fix smd/integrate_ulsph
fix smd/integrate_ulsph command
================================
===============================
Syntax
""""""

2
doc/src/fix_sph.rst
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@ -1,7 +1,7 @@
.. index:: fix sph
fix sph command
================
===============
Syntax
""""""

2
doc/src/fix_sph_stationary.rst
View File

@ -1,7 +1,7 @@
.. index:: fix sph/stationary
fix sph/stationary command
===========================
==========================
Syntax
""""""

1
doc/src/fix_temp_csvr.rst
View File

@ -1,4 +1,5 @@
.. index:: fix temp/csvr
.. index:: fix temp/csld
fix temp/csvr command
=====================

1
doc/src/fix_ttm.rst
View File

@ -1,4 +1,5 @@
.. index:: fix ttm
.. index:: fix ttm/mod
fix ttm command
===============

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