added documentation
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@ -125,17 +125,17 @@ in force units.
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Note that the *ideal* form of nudging can often be more effective at
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keeping the replicas equally spaced.
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With a value of *equal* the spring force is computed as for *ideal*,
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With a value of *equal* the spring force is computed as for *ideal*
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before the climbing stage, then is computed to promote equidistant
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spacing in energy rather than distance:
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.. parsed-literal::
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Fnudge_parallel = -\ *Kspring* \* (ED-EDideal) / (2 \* meanEDist)
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where ED is the sum of absolute (nonnegative) energy differences
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between knots, EDideal = (I-1)\*meanEdist and meanEdist is the
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average absolute energy difference. This form of nudging is
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intended to aid schemes which integrate forces along NEB
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where ED is the cumulative sum of absolute energy differences
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|E(Ri+1)-E(Ri)| for i<I, EDideal = (I-1)\*meanEdist
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and meanEdist is the average absolute energy difference. This form of
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nudging is intended to aid schemes which integrate forces along NEB
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pathways such as :doc:`fix_pafi <fix_pafi>`.
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----------
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