Updated docs.
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@ -464,15 +464,8 @@ gradient components
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where :math:`a` is the Cartesian direction for the gradient. The rows are
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organized in chunks, where each chunk corresponds to an atom :math:`j` in the
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system of :math:`N` atoms. The rows in an atom :math:`j` chunk correspond to
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atoms :math:`i` that have :math:`j` as a neighbor. The number of rows in the
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atom :math:`j` chunk is therefore equal to the number of neighbors
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:math:`N_{neighs}[j]` within the SNAP potential cutoff radius of atom :math:`j`
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, times 3 for each Cartesian direction. The total number of rows for these
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descriptor gradients is therefore
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.. math::
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3 \sum_j^{N} N_{neighs}[j].
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atoms :math:`i` in the system of :math:`N` atoms. The total number of rows for
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these descriptor gradients is therefore :math:`3N^2`.
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For *dgradflag=1*, the number of columns is equal to the number of bispectrum components,
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plus 3 additional columns representing the indices :math:`i`, :math:`j`, and :math:`a` which
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@ -483,8 +476,9 @@ For the descriptor gradient rows, the first 3 columns contain the indices
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of different descriptors indexed by :math:`k`.
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The first 3 columns of the first :math:`N` rows belong to the reference
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potential force components. The first column of the last row, after the first
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:math:`N + 3 \sum_j^{N} N_{neighs}[j]` rows, contains the reference potential
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energy. The virial components are not used with this option.
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:math:`N + 3N^2` rows, contains the reference potential
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energy. The virial components are not used with this option. The total number of
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rows is therefore :math:`N + 3N^2 + 1` and the number of columns is :math:`K + 3`.
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These values can be accessed by any command that uses per-atom values
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from a compute as input. See the :doc:`Howto output <Howto_output>` doc
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