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update AtomEye related URLs

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This commit is contained in:
Axel Kohlmeyer
2020-03-12 00:08:57 -04:00
parent d0f57289fc
commit 667c9f2a9f
6 changed files with 10 additions and 10 deletions
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2
doc/src/Howto_viz.rst
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@ -29,4 +29,4 @@ snapshots.
.. _ensight: http://www.ensight.com .. _ensight: http://www.ensight.com
.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A .. _atomeye: http://li.mit.edu/Archive/Graphics/A/

8
doc/src/Python_examples.rst
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@ -44,12 +44,12 @@ AtomEye WWW pages `here <atomeye_>`_ or `here <atomeye3_>`_ for more details:
.. parsed-literal:: .. parsed-literal::
http://mt.seas.upenn.edu/Archive/Graphics/A http://li.mit.edu/Archive/Graphics/A/
http://mt.seas.upenn.edu/Archive/Graphics/A3/A3.html http://li.mit.edu/Archive/Graphics/A3/A3.html
.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A .. _atomeye: http://li.mit.edu/Archive/Graphics/A/
.. _atomeye3: http://mt.seas.upenn.edu/Archive/Graphics/A3/A3.html .. _atomeye3: http://li.mit.edu/Archive/Graphics/A3/A3.html
The latter link is to AtomEye 3 which has the scripting The latter link is to AtomEye 3 which has the scripting
capability needed by these Python scripts. capability needed by these Python scripts.

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doc/src/Tools.rst
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@ -387,7 +387,7 @@ lmp2cfg tool
The lmp2cfg sub-directory contains a tool for converting LAMMPS output The lmp2cfg sub-directory contains a tool for converting LAMMPS output
files into a series of \*.cfg files which can be read into the files into a series of \*.cfg files which can be read into the
`AtomEye <http://mt.seas.upenn.edu/Archive/Graphics/A>`_ visualizer. See `AtomEye <http://li.mit.edu/Archive/Graphics/A/>`_ visualizer. See
the README file for more information. the README file for more information.
This tool was written by Ara Kooser at Sandia (askoose at sandia.gov). This tool was written by Ara Kooser at Sandia (askoose at sandia.gov).
@ -403,7 +403,7 @@ The matlab sub-directory contains several `MATLAB <matlabhome_>`_ scripts for
post-processing LAMMPS output. The scripts include readers for log post-processing LAMMPS output. The scripts include readers for log
and dump files, a reader for EAM potential files, and a converter that and dump files, a reader for EAM potential files, and a converter that
reads LAMMPS dump files and produces CFG files that can be visualized reads LAMMPS dump files and produces CFG files that can be visualized
with the `AtomEye <http://mt.seas.upenn.edu/Archive/Graphics/A>`_ with the `AtomEye <http://li.mit.edu/Archive/Graphics/A/>`_
visualizer. visualizer.
See the README.pdf file for more information. See the README.pdf file for more information.

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doc/src/dump.rst
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@ -305,7 +305,7 @@ be cut and pasted directly into a data file read by the
Style *cfg* has the same command syntax as style *custom* and writes Style *cfg* has the same command syntax as style *custom* and writes
extended CFG format files, as used by the extended CFG format files, as used by the
`AtomEye <http://mt.seas.upenn.edu/Archive/Graphics/A>`_ visualization `AtomEye <http://li.mit.edu/Archive/Graphics/A/>`_ visualization
package. Since the extended CFG format uses a single snapshot of the package. Since the extended CFG format uses a single snapshot of the
system per file, a wildcard "\*" must be included in the filename, as system per file, a wildcard "\*" must be included in the filename, as
discussed below. The list of atom attributes for style *cfg* must discussed below. The list of atom attributes for style *cfg* must

2
doc/src/dump_image.rst
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@ -223,7 +223,7 @@ every atom type is C (carbon). Every element has a color and diameter
associated with it, which is the same as the colors and sizes used by associated with it, which is the same as the colors and sizes used by
the `AtomEye <atomeye_>`_ visualization package. the `AtomEye <atomeye_>`_ visualization package.
.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A .. _atomeye: http://li.mit.edu/Archive/Graphics/A/
If other atom attributes are used for the *color* or *diameter* If other atom attributes are used for the *color* or *diameter*
settings, they are interpreted in the following way. settings, they are interpreted in the following way.

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doc/src/dump_modify.rst
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@ -213,7 +213,7 @@ In the case of *xyz* format dumps, there are no restrictions to what
label can be used as an element name. Any white-space separated text label can be used as an element name. Any white-space separated text
will be accepted. will be accepted.
.. _atomeye: http://mt.seas.upenn.edu/Archive/Graphics/A .. _atomeye: http://li.mit.edu/Archive/Graphics/A/
---------- ----------