git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1962 f3b2605a-c512-4ea7-a41b-209d697bcdaa

doc/compute.txt

@@ -108,6 +108,7 @@ available in LAMMPS:
 
 "centro/atom"_compute_centro_atom.html - centro-symmetry parameter for each atom
 "coord/atom"_compute_coord_atom.html - coordination number for each atom
+"damage/atom"_compute_damage_atom.html - Peridynamic damage for each atom
 "displace/atom"_compute_displace_atom.html - displacement of each atom
 "erotate/asphere"_compute_erotate_asphere.html - rotational energy of aspherical particles
 "erotate/sphere"_compute_erotate_sphere.html - rotational energy of spherical particles

doc/compute_damage_atom.html

@@ -42,7 +42,7 @@ output options.
 </P>
 <P><B>Restrictions:</B>
 </P>
-<P>The <I>damage/peri</I> style is part of the "peri" package.  It is only
+<P>The <I>damage/atom</I> style is part of the "peri" package.  It is only
 enabled if LAMMPS was built with that package.  See the <A HREF = "Section_start.html#2_3">Making
 LAMMPS</A> section for more info.
 </P>

doc/compute_damage_atom.txt

@@ -39,7 +39,7 @@ output options.
 
 [Restrictions:]
 
-The {damage/peri} style is part of the "peri" package.  It is only
+The {damage/atom} style is part of the "peri" package.  It is only
 enabled if LAMMPS was built with that package.  See the "Making
 LAMMPS"_Section_start.html#2_3 section for more info.
 

doc/units.html

@@ -15,7 +15,7 @@
 </P>
 <PRE>units style 
 </PRE>
-<UL><LI>style = <I>lj</I> or <I>real</I> or <I>metal</I> or <I>si</I> 
+<UL><LI>style = <I>lj</I> or <I>real</I> or <I>metal</I> or <I>si</I> or <I>cgs</I> 
 </UL>
 <P><B>Examples:</B>
 </P>
@@ -30,9 +30,9 @@ and data file, as well as quantities output to the screen, log file,
 and dump files.  Typically, this command is used at the very beginning
 of an input script.
 </P>
-<P>For <I>real</I> and <I>metal</I> units, LAMMPS uses physical constants from
-www.physics.nist.gov. For the definition of Kcal in real units, LAMMPS
-uses the thermochemical calorie = 4.184 J.
+<P>For all units except <I>lj</I>, LAMMPS uses physical constants from
+www.physics.nist.gov.  For the definition of Kcal in real units,
+LAMMPS uses the thermochemical calorie = 4.184 J.
 </P>
 <P>For style <I>lj</I>, all quantities are unitless.  Without loss of
 generality, LAMMPS sets the fundamental quantities mass, sigma,
@@ -101,12 +101,28 @@ results from a unitless LJ simulation into physical quantities.
 <LI>dipole = Coulombs*meters
 <LI>electric field = volts/meter 
 </UL>
-<P>This command also sets the timestep size and neighbor skin distance to
-default values for each style.  For style <I>lj</I> these are dt = 0.005
-tau and skin = 0.3 sigma.  For style <I>real</I> these are dt = 1.0 fmsec
-and skin = 2.0 Angstroms.  For style <I>metal</I> these are dt = 0.001 psec
-and skin = 2.0 Angstroms. For style <I>si</I> these are dt = 1.0e-8 sec and 
-skin = 0.001 meters.
+<P>For style <I>cgs</I>, these are the units:
+</P>
+<UL><LI>mass = grams
+<LI>distance = centimeters
+<LI>time = seconds
+<LI>energy = ergs
+<LI>velocity = cm/second
+<LI>force = dynes
+<LI>temperature = degrees K
+<LI>pressure = dyne/cm^2 or barye = 1.0e-6 bars
+<LI>viscosity = Poise
+<LI>charge = statcoulombs or esu
+<LI>dipole = debye
+<LI>electric field = statvolt/cm or dyne/esu 
+</UL>
+<P>The units command also sets the timestep size and neighbor skin
+distance to default values for each style.  For style <I>lj</I> these are
+dt = 0.005 tau and skin = 0.3 sigma.  For style <I>real</I> these are dt =
+1.0 fmsec and skin = 2.0 Angstroms.  For style <I>metal</I> these are dt =
+0.001 psec and skin = 2.0 Angstroms.  For style <I>si</I> these are dt =
+1.0e-8 sec and skin = 0.001 meters.  For style <I>cgs</I> these are dt =
+1.0e-8 sec and skin = 0.1 cm.
 </P>
 <P><B>Restrictions:</B>
 </P>

doc/units.txt

@@ -12,7 +12,7 @@ units command :h3
 
 units style :pre
 
-style = {lj} or {real} or {metal} or {si} :ul
+style = {lj} or {real} or {metal} or {si} or {cgs} :ul
 
 [Examples:]
 
@@ -27,9 +27,9 @@ and data file, as well as quantities output to the screen, log file,
 and dump files.  Typically, this command is used at the very beginning
 of an input script.
 
-For {real} and {metal} units, LAMMPS uses physical constants from
-www.physics.nist.gov. For the definition of Kcal in real units, LAMMPS
-uses the thermochemical calorie = 4.184 J.
+For all units except {lj}, LAMMPS uses physical constants from
+www.physics.nist.gov.  For the definition of Kcal in real units,
+LAMMPS uses the thermochemical calorie = 4.184 J.
 
 For style {lj}, all quantities are unitless.  Without loss of
 generality, LAMMPS sets the fundamental quantities mass, sigma,
@@ -98,12 +98,28 @@ charge = Coulombs
 dipole = Coulombs*meters
 electric field = volts/meter :ul
 
-This command also sets the timestep size and neighbor skin distance to
-default values for each style.  For style {lj} these are dt = 0.005
-tau and skin = 0.3 sigma.  For style {real} these are dt = 1.0 fmsec
-and skin = 2.0 Angstroms.  For style {metal} these are dt = 0.001 psec
-and skin = 2.0 Angstroms. For style {si} these are dt = 1.0e-8 sec and 
-skin = 0.001 meters.
+For style {cgs}, these are the units:
+
+mass = grams
+distance = centimeters
+time = seconds
+energy = ergs
+velocity = cm/second
+force = dynes
+temperature = degrees K
+pressure = dyne/cm^2 or barye = 1.0e-6 bars
+viscosity = Poise
+charge = statcoulombs or esu
+dipole = debye
+electric field = statvolt/cm or dyne/esu :ul
+
+The units command also sets the timestep size and neighbor skin
+distance to default values for each style.  For style {lj} these are
+dt = 0.005 tau and skin = 0.3 sigma.  For style {real} these are dt =
+1.0 fmsec and skin = 2.0 Angstroms.  For style {metal} these are dt =
+0.001 psec and skin = 2.0 Angstroms.  For style {si} these are dt =
+1.0e-8 sec and skin = 0.001 meters.  For style {cgs} these are dt =
+1.0e-8 sec and skin = 0.1 cm.
 
 [Restrictions:]