add section about segmentation faults
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@ -58,6 +58,35 @@ only the symptoms are not triggering an error quickly. Correspondingly,
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errors may be triggered faster with more processors and thus smaller
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sub-domains.
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Segmentation Fault
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^^^^^^^^^^^^^^^^^^
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A segmentation fault is an error reported by the **operating system**
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and not LAMMPS itself. It happens when a process tries to access a
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memory address that is not available. This can have **many** reasons:
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memory has not been allocated, a memory buffer is not large enough, a
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memory address is computed from an incorrect index, a memory buffer is
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used after it has been freed, some general memory corruption. When
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investigating a segmentation fault (aka segfault), it is important to
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determine which process is causing it; it may not always be LAMMPS. For
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example, some MPI library implementation report a segmentation fault
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from their "mpirun" or "mpiexec" command when the application has been
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terminated unexpectedly.
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While a segmentation fault is likely an indication of a bug in LAMMPS,
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it need not always be; it can also be the consequence of too aggressive
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simulation settings. For time critical code paths, LAMMPS will assume
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the user has chosen the settings carefully and will not make any checks
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to avoid to avoid performance penalties.
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A crucial step in resolving segmentation faults is to identify the exact
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location in the code where this happens. Please see `Errors_debug` for
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a couple of examples showing how to do this on a Linux machine. With
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this information, a simple way to reproduce the segmentation fault, and
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the information about the :doc:`exact LAMMPS version <Manual_version>`
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and platform you are running on, you can contact the LAMMPS developers
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or post in the LAMMPS forum to get assistance.
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Fast moving atoms
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^^^^^^^^^^^^^^^^^
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