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rename source files to be consistent with naming conventions

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This commit is contained in:
Axel Kohlmeyer
2024-09-11 06:46:51 -04:00
parent 6b2a47d9c6
commit 9f2bc30ba6
6 changed files with 22 additions and 26 deletions
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8
src/.gitignore vendored
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@ -1078,12 +1078,12 @@
/geturl.cpp
/geturl.h
/gpu_extra.h
/group_ndx.cpp
/group_ndx.h
/group2ndx.cpp
/group2ndx.h
/gz_file_writer.cpp
/gz_file_writer.h
/ndx_group.cpp
/ndx_group.h
/ndx2group.cpp
/ndx2group.h
/hyper.cpp
/hyper.h
/improper_class2.cpp

6
src/EXTRA-COMMAND/group_ndx.cpp → src/EXTRA-COMMAND/group2ndx.cpp
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@ -1,6 +1,4 @@
// -*- c++ -*-
/* ----------------------------------------------------------------------
/* -*- c++ -*--------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://www.lammps.org/, Sandia National Laboratories
LAMMPS development team: developers@lammps.org
@ -16,7 +14,7 @@
Contributing author: Axel Kohlmeyer (Temple U)
------------------------------------------------------------------------- */
#include "group_ndx.h"
#include "group2ndx.h"
#include "atom.h"
#include "comm.h"

10
src/EXTRA-COMMAND/group_ndx.h → src/EXTRA-COMMAND/group2ndx.h
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@ -1,6 +1,4 @@
// -*- c++ -*-
/* ----------------------------------------------------------
/* -*- c++ -*-----------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://www.lammps.org/, Sandia National Laboratories
LAMMPS development team: developers@lammps.org
@ -19,8 +17,8 @@ CommandStyle(group2ndx,Group2Ndx);
// clang-format on
#else
#ifndef LMP_GROUP_NDX_H
#define LMP_GROUP_NDX_H
#ifndef LMP_GROUP2NDX_H
#define LMP_GROUP2NDX_H
#include "command.h"
@ -28,7 +26,7 @@ namespace LAMMPS_NS {
class Group2Ndx : public Command {
public:
Group2Ndx(class LAMMPS *lmp) : Command(lmp){};
Group2Ndx(class LAMMPS *lmp) : Command(lmp) {};
void command(int, char **) override;
private:

9
src/EXTRA-COMMAND/ndx_group.cpp → src/EXTRA-COMMAND/ndx2group.cpp
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@ -1,6 +1,4 @@
// -*- c++ -*-
/* ----------------------------------------------------------------------
/* -*- c++ -*---------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://www.lammps.org/, Sandia National Laboratories
LAMMPS development team: developers@lammps.org
@ -16,7 +14,7 @@
Contributing author: Axel Kohlmeyer (Temple U)
------------------------------------------------------------------------- */
#include "ndx_group.h"
#include "ndx2group.h"
#include "atom.h"
#include "comm.h"
@ -33,8 +31,7 @@ static std::string find_section(FILE *fp, const std::string &name)
{
char linebuf[BUFLEN];
if (!fgets(linebuf, BUFLEN, fp))
throw TokenizerException("Read error", utils::getsyserror());
if (!fgets(linebuf, BUFLEN, fp)) throw TokenizerException("Read error", utils::getsyserror());
while (!feof(fp)) {
if (utils::strmatch(linebuf, "^\\s*\\[.*\\]\\s*$")) {
auto words = Tokenizer(linebuf).as_vector();

10
src/EXTRA-COMMAND/ndx_group.h → src/EXTRA-COMMAND/ndx2group.h
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@ -1,6 +1,4 @@
// -*- c++ -*-
/* ----------------------------------------------------------
/* -*- c++ -*-------------------------------------------------------------
LAMMPS - Large-scale Atomic/Molecular Massively Parallel Simulator
https://www.lammps.org/, Sandia National Laboratories
LAMMPS development team: developers@lammps.org
@ -19,8 +17,8 @@ CommandStyle(ndx2group,Ndx2Group);
// clang-format on
#else
#ifndef LMP_NDX_GROUP_H
#define LMP_NDX_GROUP_H
#ifndef LMP_NDX2GROUP_H
#define LMP_NDX2GROUP_H
#include "command.h"
#include <vector>
@ -29,7 +27,7 @@ namespace LAMMPS_NS {
class Ndx2Group : public Command {
public:
Ndx2Group(class LAMMPS *lmp) : Command(lmp){};
Ndx2Group(class LAMMPS *lmp) : Command(lmp) {};
void command(int, char **) override;
private:

5
src/Purge.list
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@ -53,6 +53,11 @@ lmpinstalledpkgs.h
lmpgitversion.h
mliap_model_python_couple.cpp
mliap_model_python_couple.h
# renamed in September 2024
group_ndx.cpp
group_ndx.h
ndx_group.cpp
ndx_group.h
# removed in August 2023
dump_atom_mpiio.cpp
dump_atom_mpiio.h