more updates for coul/*, gauss and gauss/cut

This commit is contained in:
Axel Kohlmeyer
2011-12-12 21:57:46 -05:00
parent 2b57a5a2b6
commit ba2a67892a
36 changed files with 912 additions and 20 deletions

View File

@ -0,0 +1,2 @@
pair_style coul/cut 2.5
pair_coeff 1 1

View File

@ -0,0 +1,2 @@
pair_style coul/debye 2.5
pair_coeff 1 1 2.5

View File

@ -0,0 +1,2 @@
pair_style coul/diel 2.5
pair_coeff 1 1 78. 1.375 0.112

View File

@ -0,0 +1,3 @@
pair_style coul/long 2.5
pair_coeff 1 1
kspace_style ewald 0.1

View File

@ -1,5 +1,5 @@
variable pstyle index lj_cut lj_sdk
variable pstyle index coul_cut coul_diel coul_long gauss gauss_cut lj_cut lj_sdk
label pstyle_non
variable newtn index on

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -0,0 +1,28 @@
2 atoms
1 bonds
1 atom types
1 bond types
-5.0000000000000000e+00 5.0000000000000000e+00 xlo xhi
-5.0000000000000000e+00 5.0000000000000000e+00 ylo yhi
-1.0000000000000000e+01 1.0000000000000000e+01 zlo zhi
Masses
1 1
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0
2 1 1 -5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 1.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2

View File

@ -0,0 +1,47 @@
4 atoms
3 bonds
2 angles
1 dihedrals
1 atom types
1 bond types
1 angle types
1 dihedral types
-1.0000000000000000e+01 1.0000000000000000e+01 xlo xhi
-1.0000000000000000e+01 1.0000000000000000e+01 ylo yhi
-5.0000000000000000e+00 5.0000000000000000e+00 zlo zhi
Masses
1 1
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
2 1 1 -3.3333299999999999e-01 7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
3 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
4 1 1 1.0000000000000000e+00 7.5000000000000000e-01 7.5000000000000000e-01 0.0000000000000000e+00 0 0 0
Velocities
1 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
2 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
3 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
4 0.0000000000000000e+00 0.0000000000000000e+00 0.0000000000000000e+00
Bonds
1 1 1 2
2 1 2 3
3 1 3 4
Angles
1 1 1 2 3
2 1 2 3 4
Dihedrals
1 1 1 2 3 4

View File

@ -13,9 +13,6 @@ Masses
1 1
Pair Coeffs
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0

View File

@ -17,9 +17,6 @@ Masses
1 1
Pair Coeffs
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0

View File

@ -13,9 +13,6 @@ Masses
1 1
Pair Coeffs
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0

View File

@ -17,9 +17,6 @@ Masses
1 1
Pair Coeffs
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0

View File

@ -13,9 +13,6 @@ Masses
1 1
Pair Coeffs
Atoms
1 1 1 5.0000000000000000e-01 0.0000000000000000e+00 0.0000000000000000e+00 -1.0000000000000000e+00 0 0 0

View File

@ -17,9 +17,6 @@ Masses
1 1
Pair Coeffs
Atoms
1 1 1 -3.3333299999999999e-01 -7.5000000000000000e-01 -7.5000000000000000e-01 0.0000000000000000e+00 0 0 0

View File

@ -4,7 +4,8 @@ for r in *.restart-*-* ; do \
t=`echo $r | sed -e 's/.restart-/.ref-/'`
c=`echo $r | sed -e 's/.restart-/.coeff-/'`
s=`echo $r | sed -e 's/.restart-/.data-/'`
test -f $s || echo "no data file $s found for restart $r" && continue
test -f $s || echo "no data file $s found for restart $r"
test -f $s || continue
grep -v LAMMPS $s | sed -e 's/-0\.0000000000/0.0000000000 /g' > refoutput/${t}
test -f $c && grep -v LAMMPS $c | sed -e 's/-0\.0000000000/0.0000000000 /g' >> refoutput/${t}
done