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fix and update documentation.

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This commit is contained in:
Axel Kohlmeyer
2011-02-03 11:33:13 -05:00
parent de4585af19
commit bcdfd07c6b
3 changed files with 11 additions and 14 deletions
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11
doc/fix_ave_histo.html
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@ -23,10 +23,13 @@
<LI>Nrepeat = # of times to use input values for calculating histogram
<LI>Nfreq = calculate histogram every this many timesteps
lo,hi = lo/hi bounds within which to histogram
Nbin = # of histogram bins
one or more input values can be listed
<LI>Nfreq = calculate histogram every this many timesteps
<LI>lo,hi = lo/hi bounds within which to histogram
<LI>Nbin = # of histogram bins
<LI>one or more input values can be listed
<LI>value = x, y, z, vx, vy, vz, fx, fy, fz, c_ID, c_ID[N], f_ID, f_ID[N], v_name

6
doc/fix_ave_histo.txt
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@ -16,9 +16,9 @@ ID, group-ID are documented in "fix"_fix.html command :ulb,l
ave/histo = style name of this fix command :l
Nevery = use input values every this many timesteps :l
Nrepeat = # of times to use input values for calculating histogram :l
Nfreq = calculate histogram every this many timesteps
lo,hi = lo/hi bounds within which to histogram
Nbin = # of histogram bins
Nfreq = calculate histogram every this many timesteps :l
lo,hi = lo/hi bounds within which to histogram :l
Nbin = # of histogram bins :l
one or more input values can be listed :l
value = x, y, z, vx, vy, vz, fx, fy, fz, c_ID, c_ID\[N\], f_ID, f_ID\[N\], v_name :l
x,y,z,vx,vy,vz,fx,fy,fz = atom attribute (position, velocity, force component)

8
doc/velocity.txt
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@ -13,7 +13,7 @@ velocity command :h3
velocity group-ID style args keyword value ... :pre
group-ID = ID of group of atoms whose velocity will be changed :ulb,l
style = {create} or {set} or {scale} or {ramp} or {reverse} or {zero} :l
style = {create} or {set} or {scale} or {ramp} or {zero} :l
{create} args = temp seed
temp = temperature value (temperature units)
seed = random # seed (positive integer)
@ -27,7 +27,6 @@ style = {create} or {set} or {scale} or {ramp} or {reverse} or {zero} :l
vlo,vhi = lower and upper velocity value (velocity units)
dim = {x} or {y} or {z}
clo,chi = lower and upper coordinate bound (distance units)
{reverse}
{zero} arg = {linear} or {angular}
{linear} = zero the linear momentum
{angular} = zero the angular momentum :pre
@ -49,7 +48,6 @@ velocity all create 300.0 4928459 rot yes dist gaussian
velocity border set NULL 4.0 v_vz sum yes units box
velocity flow scale 300.0
velocity flow ramp vx 0.0 5.0 y 5 25 temp mytemp
velocity all reverse
velocity all zero linear :pre
[Description:]
@ -93,10 +91,6 @@ outside the coordinate bounds (less than 5 or greater than 25 in this
case), are assigned velocities equal to vlo or vhi (0.0 or 5.0 in this
case).
The {reverse} style replaces the velocities of the group of atoms with
the negative of the original values. The total kinetic energy is unchanged.
No other changes are made to the velocities of the atoms.
The {zero} style adjusts the velocities of the group of atoms so that
the aggregate linear or angular momentum is zero. No other changes
are made to the velocities of the atoms.