add API to library/python interface to extract the MPI communicator

This commit is contained in:
Axel Kohlmeyer
2020-09-09 22:03:11 -04:00
parent cdd9d693ad
commit bd72ef7996
4 changed files with 64 additions and 0 deletions

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@ -21,6 +21,11 @@ event as atoms are migrating between sub-domains.
-----------------------
.. doxygenfunction:: lammps_get_mpi_comm
:project: progguide
-----------------------
.. doxygenfunction:: lammps_get_natoms
:project: progguide

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@ -332,6 +332,8 @@ class lammps(object):
self.lib.lammps_version.argtypes = [c_void_p]
self.lib.lammps_get_mpi_comm.argtypes = [c_void_p]
self.lib.lammps_decode_image_flags.argtypes = [self.c_imageint, POINTER(c_int*3)]
self.lib.lammps_extract_atom.argtypes = [c_void_p, c_char_p]
@ -601,6 +603,28 @@ class lammps(object):
# -------------------------------------------------------------------------
def get_mpi_comm(self):
"""Get the MPI communicator in use by the current LAMMPS instance
This is a wrapper around the :cpp:func:`lammps_get_mpi_comm` function
of the C-library interface. It will return ``None`` if either the
LAMMPS library was compiled without MPI support or the mpi4py
Python module is not available.
:return: MPI communicator
:rtype: MPI_Comm
"""
if self.has_mpi4py and self.has_mpi_support:
from mpi4py import MPI
f_comm = self.lib.lammps_get_mpi_comm(self.lmp)
c_comm = MPI.Comm.f2py(f_comm)
return c_comm
else:
return None
# -------------------------------------------------------------------------
def file(self, path):
"""Read LAMMPS commands from a file.

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@ -532,6 +532,40 @@ int lammps_version(void *handle)
return atoi(lmp->universe->num_ver);
}
/* ---------------------------------------------------------------------- */
/** Return current LAMMPS world communicator as integer
*
\verbatim embed:rst
This will take the LAMMPS "world" communicator and convert it to an
integer using ``MPI_Comm_c2f()``, so it is equivalent to the
corresponding MPI communicator in Fortran. This way it can be safely
passed around between different programming languages. To convert it
to the C language representation use ``MPI_Comm_f2c()``.
If LAMMPS was compiled with MPI_STUBS, this function returns -1.
.. versionadded:: 15Sep2020
\endverbatim
* \sa lammps_open_fortran
*
* \param handle pointer to a previously created LAMMPS instance
* \return Fortran representation of the LAMMPS world communicator */
int lammps_get_mpi_comm(void *handle)
{
#ifdef MPI_STUBS
return -1;
#else
LAMMPS *lmp = (LAMMPS *) handle;
MPI_Fint f_comm = MPI_Comm_c2f(lmp->world);
return f_comm;
#endif
}
/* ---------------------------------------------------------------------- */
/** Return the total number of atoms in the system.

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@ -98,6 +98,7 @@ void lammps_commands_string(void *handle, const char *str);
* ----------------------------------------------------------------------- */
int lammps_version(void *handle);
int lammps_get_mpi_comm(void* handle);
double lammps_get_natoms(void *handle);
double lammps_get_thermo(void *handle, char *keyword);