git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@1783 f3b2605a-c512-4ea7-a41b-209d697bcdaa

This commit is contained in:
sjplimp
2008-05-09 15:01:30 +00:00
parent f2c1ad7ea1
commit c51a42c5dd
4 changed files with 31 additions and 21 deletions

View File

@ -93,9 +93,9 @@ class Fix : protected Pointers {
virtual void final_integrate_respa(int) {}
virtual void min_post_force(int) {}
virtual double min_energy(double *, double *) {return 0.0;}
virtual double min_energy(double *) {return 0.0;}
virtual void min_step(double, double *) {}
virtual int min_dof() {return 0;}
virtual void min_xinitial(double *) {}
virtual int pack_comm(int, int *, double *, int, int *) {return 0;}
virtual void unpack_comm(int, int, double *) {}

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@ -328,18 +328,35 @@ void Modify::min_post_force(int vflag)
return energy and forces on extra degrees of freedom
------------------------------------------------------------------------- */
double Modify::min_energy(double *xextra, double *fextra)
double Modify::min_energy(double *fextra)
{
int ifix,index;
index = 0;
double energy_extra = 0.0;
double eng = 0.0;
for (int i = 0; i < n_min_energy; i++) {
ifix = list_min_energy[i];
energy_extra += fix[ifix]->min_energy(&xextra[index],&fextra[index]);
eng += fix[ifix]->min_energy(&fextra[index]);
index += fix[ifix]->min_dof();
}
return eng;
}
/* ----------------------------------------------------------------------
minimizer energy, force evaluation only for relevant fixes
return energy and forces on extra degrees of freedom
------------------------------------------------------------------------- */
void Modify::min_step(double delta, double *fextra)
{
int ifix,index;
index = 0;
for (int i = 0; i < n_min_energy; i++) {
ifix = list_min_energy[i];
fix[ifix]->min_step(delta,&fextra[index]);
index += fix[ifix]->min_dof();
}
return energy_extra;
}
/* ----------------------------------------------------------------------
@ -354,19 +371,6 @@ int Modify::min_dof()
return ndof;
}
/* ----------------------------------------------------------------------
minimizer initial xextra values only from relevant fixes
------------------------------------------------------------------------- */
void Modify::min_xinitial(double *xextra)
{
int index = 0;
for (int i = 0; i < n_min_energy; i++) {
fix[list_min_energy[i]]->min_xinitial(&xextra[index]);
index += fix[list_min_energy[i]]->min_dof();
}
}
/* ----------------------------------------------------------------------
add a new fix or replace one with same ID
------------------------------------------------------------------------- */

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@ -52,9 +52,9 @@ class Modify : protected Pointers {
void final_integrate_respa(int);
void min_post_force(int);
double min_energy(double *, double *);
double min_energy(double *);
void min_step(double, double *);
int min_dof();
void min_xinitial(double *);
void add_fix(int, char **);
void modify_fix(int, char **);

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@ -140,6 +140,7 @@ DumpStyle(xyz,DumpXYZ)
#endif
#ifdef FixInclude
#include "fix_box_relax.h"
#include "fix_add_force.h"
#include "fix_ave_atom.h"
#include "fix_ave_force.h"
@ -198,6 +199,7 @@ DumpStyle(xyz,DumpXYZ)
#endif
#ifdef FixClass
FixStyle(box/relax,FixBoxRelax)
FixStyle(addforce,FixAddForce)
FixStyle(ave/atom,FixAveAtom)
FixStyle(aveforce,FixAveForce)
@ -280,11 +282,15 @@ IntegrateStyle(verlet,Verlet)
#ifdef MinimizeInclude
#include "min_cg.h"
#include "min_sd.h"
#include "min_cg2.h"
#include "min_sd2.h"
#endif
#ifdef MinimizeClass
MinimizeStyle(cg,MinCG)
MinimizeStyle(sd,MinSD)
MinimizeStyle(cg2,MinCG2)
MinimizeStyle(sd2,MinSD2)
# endif
#ifdef PairInclude