ICODE-ADC/lammps
4
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

remove redundant/obsolete link definitions

Browse Source
This commit is contained in:
Axel Kohlmeyer
2020-01-31 14:00:53 -05:00
parent 56ff70de70
commit ce10fd01a8
691 changed files with 0 additions and 2086 deletions
Download Patch File Download Diff File Expand all files Collapse all files

3
doc/src/Build.rst
View File

@ -23,6 +23,3 @@ as described on the :doc:`Install <Install>` doc page.
Build_development Build_development
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Build_basics.rst
View File

@ -432,6 +432,3 @@ wish to do this you will need to first build LAMMPS, then manually
copy the desired LAMMPS files to the appropriate system directories. copy the desired LAMMPS files to the appropriate system directories.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Build_cmake.rst
View File

@ -240,6 +240,3 @@ Instructions on how to install it on various platforms can be found
`on this page <https://cmake.org/install/>`_. `on this page <https://cmake.org/install/>`_.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Build_development.rst
View File

@ -115,6 +115,3 @@ These reports require GCOVR to be installed. The easiest way to do this to insta
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Build_extras.rst
View File

@ -1416,6 +1416,3 @@ Makefile.lammps. If none of the provided files work, you will need to
edit the Makefile.lammps file. See lib/vtk/README for details. edit the Makefile.lammps file. See lib/vtk/README for details.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Build_link.rst
View File

@ -86,6 +86,3 @@ Other examples in the COUPLE directory use coupling ideas discussed on
the :doc:`Howto couple <Howto_couple>` doc page. the :doc:`Howto couple <Howto_couple>` doc page.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Build_make.rst
View File

@ -89,6 +89,3 @@ settings may become outdated:
make kokkos_phi # build with the KOKKOS package for KNLs make kokkos_phi # build with the KOKKOS package for KNLs
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Build_package.rst
View File

@ -260,6 +260,3 @@ Type "make package-diff" to list all differences between pairs of
files in both the src dir and a package dir. files in both the src dir and a package dir.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Build_settings.rst
View File

@ -490,6 +490,3 @@ e.g. to Python.
LMP_INC = -DLAMMPS_EXCEPTIONS LMP_INC = -DLAMMPS_EXCEPTIONS
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Build_windows.rst
View File

@ -106,6 +106,3 @@ style build environment, but the LAMMPS code itself is not fully ported
to support Visual C++. Volunteers to take on this task are welcome. to support Visual C++. Volunteers to take on this task are welcome.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Commands_removed.rst
View File

@ -62,6 +62,3 @@ combination of the commands :doc:`read_restart <read_restart>` and
convenience this conversion can also be triggered by :doc:`command line flags <Run_options>` convenience this conversion can also be triggered by :doc:`command line flags <Run_options>`
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Errors.rst
View File

@ -17,6 +17,3 @@ additional details for many of them.
Errors_warnings Errors_warnings
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Errors_bugs.rst
View File

@ -27,6 +27,3 @@ causing the problem.
this page needs to have GitHub issues info added this page needs to have GitHub issues info added
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Errors_common.rst
View File

@ -123,6 +123,3 @@ setting or two (usually via an environment variable) to enable
buffering or boost the sizes of messages that can be buffered. buffering or boost the sizes of messages that can be buffered.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Errors_messages.rst
View File

@ -8419,6 +8419,3 @@ keyword to allow for additional bonds to be formed
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Errors_warnings.rst
View File

@ -800,6 +800,3 @@ This will most likely cause errors in kinetic fluctuations.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Examples.rst
View File

@ -232,6 +232,3 @@ page for more info on specific USER packages.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto.rst
View File

@ -101,6 +101,3 @@ Packages howto
Howto_spins Howto_spins
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_2d.rst
View File

@ -43,6 +43,3 @@ are for 2d models.
commands. commands.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_barostat.rst
View File

@ -63,6 +63,3 @@ re-define what pressure compute is used for default thermodynamic
output. output.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_bash.rst
View File

@ -286,6 +286,3 @@ the PATH variable should be
tutorials explaining Bash and Basic Unix commands (e.g., `Linux Journey <https://linuxjourney.com>`_) tutorials explaining Bash and Basic Unix commands (e.g., `Linux Journey <https://linuxjourney.com>`_)
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_bioFF.rst
View File

@ -146,6 +146,3 @@ Spellmeyer, Fox, Caldwell, Kollman, JACS 117, 5179-5197 (1995).
(1990). (1990).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_body.rst
View File

@ -514,6 +514,3 @@ Particuology, 6, 455 (2008).
Matter, 13, 1 (2011). Matter, 13, 1 (2011).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_chunk.rst
View File

@ -214,6 +214,3 @@ on the :doc:`compute chunk/spread/atom <compute_chunk_spread_atom>`
command doc page. command doc page.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_client_server.rst
View File

@ -159,6 +159,3 @@ the multiple executables that the mpirun command launches. In this
example the client was colored with a 0, and the server with a 1. example the client was colored with a 0, and the server with a 1.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_coreshell.rst
View File

@ -266,6 +266,3 @@ The additional section in the date file would be formatted like this:
6, 393-404 (1994). 6, 393-404 (1994).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_couple.rst
View File

@ -120,6 +120,3 @@ described on the :doc:`Howto client/server <Howto_client_server>` doc
page. page.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_diffusion.rst
View File

@ -27,6 +27,3 @@ and thus extract D.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_dispersion.rst
View File

@ -100,6 +100,3 @@ rule is fulfilled. If mixing rules do not apply, the user will have
to specify this command explicitly. to specify this command explicitly.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_drude.rst
View File

@ -67,6 +67,3 @@ too close, which can cause numerical issues.
**(Lamoureux and Roux)** G. Lamoureux, B. Roux, J. Chem. Phys 119, 3025 (2003) **(Lamoureux and Roux)** G. Lamoureux, B. Roux, J. Chem. Phys 119, 3025 (2003)
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_drude2.rst
View File

@ -537,6 +537,3 @@ NPT ensemble using Nose-Hoover thermostat:
Let, 418, 245-249 (2006) Let, 418, 245-249 (2006)
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_elastic.rst
View File

@ -44,6 +44,3 @@ converge and requires careful post-processing :ref:`(Shinoda) <Shinoda1>`
**(Shinoda)** Shinoda, Shiga, and Mikami, Phys Rev B, 69, 134103 (2004). **(Shinoda)** Shinoda, Shiga, and Mikami, Phys Rev B, 69, 134103 (2004).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_github.rst
View File

@ -494,6 +494,3 @@ A discussion of the LAMMPS developer GitHub workflow can be found in the file
`doc/github-development-workflow.md <https://github.com/lammps/lammps/blob/master/doc/github-development-workflow.md>`_ `doc/github-development-workflow.md <https://github.com/lammps/lammps/blob/master/doc/github-development-workflow.md>`_
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_granular.rst
View File

@ -50,6 +50,3 @@ computations between frozen atoms by using this command:
doc page, where 2d simulations are discussed. doc page, where 2d simulations are discussed.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_kappa.rst
View File

@ -81,6 +81,3 @@ formalism.
(2015). (2015).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_library.rst
View File

@ -247,6 +247,3 @@ assigned via the lammps\_scatter\_atoms() or lammps\_extract\_atom()
functions. functions.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_manifold.rst
View File

@ -52,6 +52,3 @@ to the relevant fixes.
preprint available at `arXiv:1411.3019 <http://arxiv.org/abs/1411.3019/>`_. preprint available at `arXiv:1411.3019 <http://arxiv.org/abs/1411.3019/>`_.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_multiple.rst
View File

@ -98,6 +98,3 @@ partition. When one finished, that partition would then start
the 4th simulation, and so forth, until all 8 were completed. the 4th simulation, and so forth, until all 8 were completed.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_nemd.rst
View File

@ -55,6 +55,3 @@ using the :doc:`fix flow/gauss <fix_flow_gauss>` command.
Cambridge University Press, https://doi.org/10.1017/9781139017848, (2017). Cambridge University Press, https://doi.org/10.1017/9781139017848, (2017).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_output.rst
View File

@ -344,6 +344,3 @@ vector input could be a column of an array.
+--------------------------------------------------------+----------------------------------------------+-------------------------------------------+ +--------------------------------------------------------+----------------------------------------------+-------------------------------------------+
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_polarizable.rst
View File

@ -73,6 +73,3 @@ relative core-Drude particle motion is thermostatted separately as
well. well.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_pylammps.rst
View File

@ -579,6 +579,3 @@ want to encourage people to write tutorial style IPython notebooks showcasing LA
and maybe their latest research results. and maybe their latest research results.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_replica.rst
View File

@ -55,6 +55,3 @@ a multi-replica simulation on more replicas than you have
physical processors. physical processors.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_restart.rst
View File

@ -100,6 +100,3 @@ LAMMPS the current timestep. This value is stored in restart files,
but not in data files. but not in data files.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_spc.rst
View File

@ -52,6 +52,3 @@ Wikipedia also has a nice article on `water models <http://en.wikipedia.org/wiki
6269-6271 (1987). 6269-6271 (1987).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_spherical.rst
View File

@ -238,6 +238,3 @@ as rigid bodies, and their motion integrated with a command like :doc:`fix nve/b
particles are computed via a command like :doc:`pair_style body/nparticle <pair_body_nparticle>`. particles are computed via a command like :doc:`pair_style body/nparticle <pair_body_nparticle>`.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_spins.rst
View File

@ -68,6 +68,3 @@ magnetic spin, or the magnetic force acting on this spin.
Journal of Computational Physics, 372, 406-425, (2018). Journal of Computational Physics, 372, 406-425, (2018).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_temperature.rst
View File

@ -33,6 +33,3 @@ velocity bias. This allows the translational velocity of spherical or
aspherical particles to be adjusted in prescribed ways. aspherical particles to be adjusted in prescribed ways.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_thermostat.rst
View File

@ -94,6 +94,3 @@ temperature compute is used for default thermodynamic output.
Cambridge University Press, https://doi.org/10.1017/9781139017848, (2017). Cambridge University Press, https://doi.org/10.1017/9781139017848, (2017).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_tip3p.rst
View File

@ -76,6 +76,3 @@ Phys, 79, 926 (1983).
**(Price)** Price and Brooks, J Chem Phys, 121, 10096 (2004). **(Price)** Price and Brooks, J Chem Phys, 121, 10096 (2004).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_tip4p.rst
View File

@ -111,6 +111,3 @@ Wikipedia also has a nice article on `water models <http://en.wikipedia.org/wiki
Phys, 79, 926 (1983). Phys, 79, 926 (1983).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

14
doc/src/Howto_triclinic.rst
View File

@ -1,17 +1,3 @@
:doc:`Higher level section <Howto>` - `LAMMPS WWW Site <lws_>`_ - `LAMMPS Documentation <ld_>`_ - `LAMMPS Commands <lc_>`_
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands\_all.html
Triclinic (non-orthogonal) simulation boxes Triclinic (non-orthogonal) simulation boxes
=========================================== ===========================================

3
doc/src/Howto_viscosity.rst
View File

@ -143,6 +143,3 @@ with time at sufficiently long times.
Cambridge University Press, https://doi.org/10.1017/9781139017848, (2017). Cambridge University Press, https://doi.org/10.1017/9781139017848, (2017).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_viz.rst
View File

@ -38,6 +38,3 @@ snapshots.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Howto_walls.rst
View File

@ -71,6 +71,3 @@ command. At some point we plan to allow regoin surfaces to be used as
frictional walls, as well as triangulated surfaces. frictional walls, as well as triangulated surfaces.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Install.rst
View File

@ -53,6 +53,3 @@ some of them if you download executables, as explained on the pages
listed above. listed above.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Install_conda.rst
View File

@ -43,6 +43,3 @@ up the Conda capability.
.. _mini_conda_install: https://docs.conda.io/en/latest/miniconda.html .. _mini_conda_install: https://docs.conda.io/en/latest/miniconda.html
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Install_git.rst
View File

@ -123,6 +123,3 @@ gmail.com) and Richard Berger (Temple U, richard.berger at
temple.edu). temple.edu).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Install_linux.rst
View File

@ -264,6 +264,3 @@ Note that the AUR provides build-scripts that download the source and
the build the package on your machine. the build the package on your machine.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Install_mac.rst
View File

@ -49,6 +49,3 @@ up the Homebrew capability.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Install_patch.rst
View File

@ -63,6 +63,3 @@ up to date.
package-update". package-update".
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Install_svn.rst
View File

@ -97,6 +97,3 @@ gmail.com) and Richard Berger (Temple U, richard.berger at
temple.edu). temple.edu).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Install_tarball.rst
View File

@ -79,6 +79,3 @@ in the new patch release. Instructions for applying a patch file are
on the :doc:`Install patch <Install_patch>` doc page. on the :doc:`Install patch <Install_patch>` doc page.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Install_windows.rst
View File

@ -44,6 +44,3 @@ Thanks to Axel Kohlmeyer (Temple U, akohlmey at gmail.com) for setting
up this Windows capability. up this Windows capability.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Intro.rst
View File

@ -16,6 +16,3 @@ These pages provide a brief introduction to LAMMPS.
Intro_website Intro_website
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Intro_authors.rst
View File

@ -64,6 +64,3 @@ version of LAMMPS were the following:
* Jim Belak and Roy Pollock (LLNL) * Jim Belak and Roy Pollock (LLNL)
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Intro_features.rst
View File

@ -226,6 +226,3 @@ classical MD options:
* :doc:`two-temperature electron model <fix_ttm>` * :doc:`two-temperature electron model <fix_ttm>`
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Intro_nonfeatures.rst
View File

@ -82,6 +82,3 @@ Here are suggestions on how to perform these tasks:
and is available for download from `this page <http://www.cs.sandia.gov/~sjplimp/download.html>`_. and is available for download from `this page <http://www.cs.sandia.gov/~sjplimp/download.html>`_.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Intro_opensource.rst
View File

@ -44,6 +44,3 @@ source file headers (including the copyright and GPL notices) should
remain part of the code. remain part of the code.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Intro_overview.rst
View File

@ -49,6 +49,3 @@ Processors communicate and store "ghost" atom information for atoms
that border their sub-domain. that border their sub-domain.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Intro_website.rst
View File

@ -34,6 +34,3 @@ this Intr are included in this list.
* `Funding for LAMMPS <http://lammps.sandia.gov/funding.html>`_ * `Funding for LAMMPS <http://lammps.sandia.gov/funding.html>`_
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Manual.rst
View File

@ -87,6 +87,3 @@ Indices and tables
</BODY> </BODY>
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Manual_build.rst
View File

@ -136,6 +136,3 @@ software installed. `http://calibre-ebook.com/ <http://calibre-ebook.com/>`_
You first create the ePUB file and then convert it with 'make mobi' You first create the ePUB file and then convert it with 'make mobi'
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Manual_version.rst
View File

@ -23,6 +23,3 @@ first page of the :doc:`manual <Manual>`.
describe the version you have, which may be older. describe the version you have, which may be older.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify.rst
View File

@ -35,6 +35,3 @@ as a pull request on our `GitHub site <https://github.com/lammps/lammps>`_, afte
Modify_variable Modify_variable
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_atom.rst
View File

@ -119,6 +119,3 @@ Ivector or dvector are vectors of length Nlocal = # of owned atoms,
which store the attributes of individual atoms. which store the attributes of individual atoms.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_body.rst
View File

@ -35,6 +35,3 @@ class. See body.h for details.
+----------------------+-----------------------------------------------------------+ +----------------------+-----------------------------------------------------------+
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_bond.rst
View File

@ -36,6 +36,3 @@ for details and specific additional methods.
+-----------------------+---------------------------------------------------------------------------+ +-----------------------+---------------------------------------------------------------------------+
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_command.rst
View File

@ -20,6 +20,3 @@ Of course, the new class can define other methods and variables as
needed. needed.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_compute.rst
View File

@ -57,6 +57,3 @@ compute\_vector or compute\_peratom methods. The USER-TALLY package
provides *examples*\ \_compute\_tally.html for utilizing this mechanism. provides *examples*\ \_compute\_tally.html for utilizing this mechanism.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_contribute.rst
View File

@ -198,6 +198,3 @@ easier you make it for people to get started, e.g. by providing example
scripts, the more likely it is that users will try out your new feature. scripts, the more likely it is that users will try out your new feature.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_dump.rst
View File

@ -32,6 +32,3 @@ added to the :doc:`dump custom <dump>` command. Instead they are added
to the :doc:`compute property/atom <compute_property_atom>` command. to the :doc:`compute property/atom <compute_property_atom>` command.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_fix.rst
View File

@ -153,6 +153,3 @@ enables a fix to contribute values to thermodynamic output, as printed
quantities and/or to be summed to the potential energy of the system. quantities and/or to be summed to the potential energy of the system.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_kspace.rst
View File

@ -21,6 +21,3 @@ class. See kspace.h for details.
+---------------+----------------------------------------------+ +---------------+----------------------------------------------+
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_min.rst
View File

@ -19,6 +19,3 @@ class. See min.h for details.
+---------------+------------------------------------------+ +---------------+------------------------------------------+
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_overview.rst
View File

@ -102,6 +102,3 @@ functionality:
**(Foo)** Foo, Morefoo, and Maxfoo, J of Classic Potentials, 75, 345 (1997). **(Foo)** Foo, Morefoo, and Maxfoo, J of Classic Potentials, 75, 345 (1997).
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_pair.rst
View File

@ -35,6 +35,3 @@ Here is a brief description of the class methods in pair.h:
The inner/middle/outer routines are optional. The inner/middle/outer routines are optional.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_region.rst
View File

@ -22,6 +22,3 @@ class. See region.h for details.
+-------------------+---------------------------------------------------------------------+ +-------------------+---------------------------------------------------------------------+
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_thermo.rst
View File

@ -27,6 +27,3 @@ be simpler to compute what you wish via one of those constructs, than
by adding a new keyword to the thermo command. by adding a new keyword to the thermo command.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Modify_variable.rst
View File

@ -40,6 +40,3 @@ Adding new :doc:`compute styles <compute>` (whose calculated values can
then be accessed by variables) is discussed on the :doc:`Modify compute <Modify_compute>` doc page. then be accessed by variables) is discussed on the :doc:`Modify compute <Modify_compute>` doc page.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Packages.rst
View File

@ -20,6 +20,3 @@ LAMMPS build process.
Packages_details Packages_details
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Packages_details.rst
View File

@ -2448,6 +2448,3 @@ which discuss the `QuickFF <quickff_>`_ methodology.
* examples/USER/yaff * examples/USER/yaff
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Packages_standard.rst
View File

@ -91,6 +91,3 @@ package:
+----------------------------------+--------------------------------------+----------------------------------------------------+-----------------------------------------------------+---------+ +----------------------------------+--------------------------------------+----------------------------------------------------+-----------------------------------------------------+---------+
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Packages_user.rst
View File

@ -115,6 +115,3 @@ package:
.. _MOFplus: https://www.mofplus.org/content/show/MOF-FF .. _MOFplus: https://www.mofplus.org/content/show/MOF-FF
.. _PLUMED: http://www.plumed.org .. _PLUMED: http://www.plumed.org
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Python_call.rst
View File

@ -79,6 +79,3 @@ library and insure that Python can find the python/lammps.py file and
the shared library. the shared library.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Python_examples.rst
View File

@ -111,6 +111,3 @@ different visualization package options. Click to see larger images:
:target: JPG/screenshot_vmd.jpg :target: JPG/screenshot_vmd.jpg
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Python_head.rst
View File

@ -44,6 +44,3 @@ a pull request to our `GitHub site <https://github.com/lammps/lammps>`_,
and they can be added to the LAMMPS distribution or webpage. and they can be added to the LAMMPS distribution or webpage.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Python_install.rst
View File

@ -70,6 +70,3 @@ system directory. This is not needed if you set the LD\_LIBRARY\_PATH
environment variable as described above. environment variable as described above.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Python_library.rst
View File

@ -275,6 +275,3 @@ following steps:
:members: :members:
:no-undoc-members: :no-undoc-members:
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

3
doc/src/Python_mpi.rst
View File

@ -76,6 +76,3 @@ and see one line of output for each processor you run on.
the right one. the right one.
.. _lws: http://lammps.sandia.gov
.. _ld: Manual.html
.. _lc: Commands_all.html

Some files were not shown because too many files have changed in this diff Show More