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fix broken links

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Axel Kohlmeyer
2023-12-01 15:25:51 -05:00
parent 45372937db
commit ef400cc13f
5 changed files with 12 additions and 12 deletions
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6
doc/src/Howto_body.rst
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@ -167,7 +167,7 @@ sub-particle displacements should reflect the fact the body is defined
withing a general triclinic box with edge vectors **A**,**B**,**C**. withing a general triclinic box with edge vectors **A**,**B**,**C**.
LAMMPS will rotate the box to convert it to a restricted triclinic LAMMPS will rotate the box to convert it to a restricted triclinic
box. This operation will also rotate the orientation of the body box. This operation will also rotate the orientation of the body
particles. See the :doc:`Howto triclinic <Howto_triclininc>` doc page particles. See the :doc:`Howto triclinic <Howto_triclinic>` doc page
for more details. for more details.
The :doc:`pair_style body/nparticle <pair_body_nparticle>` command can be used The :doc:`pair_style body/nparticle <pair_body_nparticle>` command can be used
@ -288,7 +288,7 @@ defined withing a general triclinic box with edge vectors
**A**,**B**,**C**. LAMMPS will rotate the box to convert it to a **A**,**B**,**C**. LAMMPS will rotate the box to convert it to a
restricted triclinic box. This operation will also rotate the restricted triclinic box. This operation will also rotate the
orientation of the body particles. See the :doc:`Howto triclinic orientation of the body particles. See the :doc:`Howto triclinic
<Howto_triclininc>` doc page for more details. <Howto_triclinic>` doc page for more details.
The :doc:`pair_style body/rounded/polygon <pair_body_rounded_polygon>` The :doc:`pair_style body/rounded/polygon <pair_body_rounded_polygon>`
command can be used with this body style to compute body/body command can be used with this body style to compute body/body
@ -463,7 +463,7 @@ defined withing a general triclinic box with edge vectors
**A**,**B**,**C**. LAMMPS will rotate the box to convert it to a **A**,**B**,**C**. LAMMPS will rotate the box to convert it to a
restricted triclinic box. This operation will also rotate the restricted triclinic box. This operation will also rotate the
orientation of the body particles. See the :doc:`Howto triclinic orientation of the body particles. See the :doc:`Howto triclinic
<Howto_triclininc>` doc page for more details. <Howto_triclinic>` doc page for more details.
The :doc:`pair_style body/rounded/polhedron The :doc:`pair_style body/rounded/polhedron
<pair_body_rounded_polyhedron>` command can be used with this body <pair_body_rounded_polyhedron>` command can be used with this body

8
doc/src/Howto_triclinic.rst
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@ -17,9 +17,9 @@ is created by one of these commands:
* :doc:`read_dump <read_dump>` * :doc:`read_dump <read_dump>`
Internally, LAMMPS defines box size parameters lx,ly,lz where lx = Internally, LAMMPS defines box size parameters lx,ly,lz where lx =
xhi-xlo, and similarly in the y and z dimensions. The 6 parameters, xhi-xlo, and similarly in the y and z dimensions. The 6 parameters, as
as well as lx,ly,lz, can be output via the :doc:`thermo_style custom well as lx,ly,lz, can be output via the :doc:`thermo_style custom
<thermo_style>` command. See the :doc:'Howto 2d <Howto_2d>` doc page <thermo_style>` command. See the :doc:`Howto 2d <Howto_2d>` doc page
for info on how zlo and zhi are defined for 2d simulations. for info on how zlo and zhi are defined for 2d simulations.
---------- ----------
@ -30,7 +30,7 @@ Triclinic simulation boxes
LAMMPS also allows simulations to be performed using triclinic LAMMPS also allows simulations to be performed using triclinic
(non-orthogonal) simulation boxes shaped as a 3d parallelepiped with (non-orthogonal) simulation boxes shaped as a 3d parallelepiped with
triclinic symmetry. For 2d simulations a triclinic simulation box is triclinic symmetry. For 2d simulations a triclinic simulation box is
effectively a parallelogram; see the :doc:'Howto 2d <Howto_2d>` doc effectively a parallelogram; see the :doc:`Howto 2d <Howto_2d>` doc
page for details. page for details.
One use of triclinic simulation boxes is to model solid-state crystals One use of triclinic simulation boxes is to model solid-state crystals

4
doc/src/dump.rst
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@ -288,7 +288,7 @@ with LAMMPS or third-party tools can read this format, as does the
For all these styles, the dimensions of the simulation box are For all these styles, the dimensions of the simulation box are
included in each snapshot. The simulation box in LAMMPS can be included in each snapshot. The simulation box in LAMMPS can be
defined in one of 3 ways: orthogonal, restricted triclinic, and defined in one of 3 ways: orthogonal, restricted triclinic, and
general triclinic. See the :doc:`Howto triclinic <Howto_triclininc>` general triclinic. See the :doc:`Howto triclinic <Howto_triclinic>`
doc page for a detailed description of all 3 options. doc page for a detailed description of all 3 options.
For an orthogonal simulation box the box information is formatted as: For an orthogonal simulation box the box information is formatted as:
@ -668,7 +668,7 @@ General triclinic simulation box output for the *atom* and *custom* styles:
As mentioned above, the simulation box can be defined as a general As mentioned above, the simulation box can be defined as a general
triclinic box, which means that 3 arbitrary box edge vectors **A**, triclinic box, which means that 3 arbitrary box edge vectors **A**,
**B**, **C** can be specified. See the :doc:`Howto triclinic **B**, **C** can be specified. See the :doc:`Howto triclinic
<Howto_triclininc>` doc page for a detailed description of general <Howto_triclinic>` doc page for a detailed description of general
triclinic boxes. triclinic boxes.
This option is provided as a convenience for users who may be This option is provided as a convenience for users who may be

2
doc/src/lattice.rst
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@ -200,7 +200,7 @@ the Z direction.
The *triclinic/general* option specifies that the defined lattice is The *triclinic/general* option specifies that the defined lattice is
for use with a general triclinic simulation box, as opposed to an for use with a general triclinic simulation box, as opposed to an
orthogonal or restricted triclinic box. The :doc:`Howto triclinic orthogonal or restricted triclinic box. The :doc:`Howto triclinic
<Howto_triclnic>` doc page explains all 3 kinds of simluation boxes <Howto_triclinic>` doc page explains all 3 kinds of simluation boxes
LAMMPS supports. LAMMPS supports.
If this option is specified, a *custom* lattice style must be used. If this option is specified, a *custom* lattice style must be used.

4
doc/src/read_data.rst
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@ -923,7 +923,7 @@ zero.
data file in the direction of the **A** edge vector. Likewise the data file in the direction of the **A** edge vector. Likewise the
(x0,y0,z0) per-atom strain-free coordinates should be inside the (x0,y0,z0) per-atom strain-free coordinates should be inside the
general triclinic simulation box as explained in the note above. general triclinic simulation box as explained in the note above.
See the :doc:`Howto triclinic <Howto_triclininc>` doc page for more See the :doc:`Howto triclinic <Howto_triclinic>` doc page for more
details. details.
The atom-ID is used to identify the atom throughout the simulation and The atom-ID is used to identify the atom throughout the simulation and
@ -1675,7 +1675,7 @@ Wz are in units of angular velocity (radians/time).
If the data file defines a general triclinic box, then each of the 3 If the data file defines a general triclinic box, then each of the 3
vectors (translational velocity, angular momentum, angular velocity) vectors (translational velocity, angular momentum, angular velocity)
should be specified for the rotated coordinate axes of the general should be specified for the rotated coordinate axes of the general
triclinic box. See the :doc:`Howto triclinic <Howto_triclininc>` doc triclinic box. See the :doc:`Howto triclinic <Howto_triclinic>` doc
page for more details. page for more details.
For atom_style hybrid, following the 4 initial values (ID,vx,vy,vz), For atom_style hybrid, following the 4 initial values (ID,vx,vy,vz),