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git-svn-id: svn://svn.icms.temple.edu/lammps-ro/trunk@14498 f3b2605a-c512-4ea7-a41b-209d697bcdaa

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2016-01-26 15:07:02 +00:00
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5
doc/angle_charmm.html
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@ -127,6 +127,9 @@
<div class="section" id="angle-style-charmm-command">
<span id="index-0"></span><h1>angle_style charmm command<a class="headerlink" href="#angle-style-charmm-command" title="Permalink to this headline"></a></h1>
</div>
<div class="section" id="angle-style-charmm-intel-command">
<h1>angle_style charmm/intel command<a class="headerlink" href="#angle-style-charmm-intel-command" title="Permalink to this headline"></a></h1>
</div>
<div class="section" id="angle-style-charmm-kk-command">
<h1>angle_style charmm/kk command<a class="headerlink" href="#angle-style-charmm-kk-command" title="Permalink to this headline"></a></h1>
</div>
@ -152,7 +155,7 @@ angle_coeff 1 300.0 107.0 50.0 3.0
<p>with an additional Urey_Bradley term based on the distance <em>r</em> between
the 1st and 3rd atoms in the angle. K, theta0, Kub, and Rub are
coefficients defined for each angle type.</p>
<p>See <a class="reference internal" href="special_bonds.html#mackerell"><span>(MacKerell)</span></a> for a description of the CHARMM force
<p>See <a class="reference internal" href="dihedral_charmm.html#mackerell"><span>(MacKerell)</span></a> for a description of the CHARMM force
field.</p>
<p>The following coefficients must be defined for each angle type via the
<a class="reference internal" href="angle_coeff.html"><em>angle_coeff</em></a> command as in the example above, or in

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doc/angle_charmm.txt
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@ -7,6 +7,7 @@
:line
angle_style charmm command :h3
angle_style charmm/intel command :h3
angle_style charmm/kk command :h3
angle_style charmm/omp command :h3

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doc/bond_harmonic.html
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@ -127,6 +127,9 @@
<div class="section" id="bond-style-harmonic-command">
<span id="index-0"></span><h1>bond_style harmonic command<a class="headerlink" href="#bond-style-harmonic-command" title="Permalink to this headline"></a></h1>
</div>
<div class="section" id="bond-style-harmonic-intel-command">
<h1>bond_style harmonic/intel command<a class="headerlink" href="#bond-style-harmonic-intel-command" title="Permalink to this headline"></a></h1>
</div>
<div class="section" id="bond-style-harmonic-kk-command">
<h1>bond_style harmonic/kk command<a class="headerlink" href="#bond-style-harmonic-kk-command" title="Permalink to this headline"></a></h1>
</div>

1
doc/bond_harmonic.txt
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@ -7,6 +7,7 @@
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bond_style harmonic command :h3
bond_style harmonic/intel command :h3
bond_style harmonic/kk command :h3
bond_style harmonic/omp command :h3

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doc/dihedral_charmm.html
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@ -127,6 +127,9 @@
<div class="section" id="dihedral-style-charmm-command">
<span id="index-0"></span><h1>dihedral_style charmm command<a class="headerlink" href="#dihedral-style-charmm-command" title="Permalink to this headline"></a></h1>
</div>
<div class="section" id="dihedral-style-charmm-intel-command">
<h1>dihedral_style charmm/intel command<a class="headerlink" href="#dihedral-style-charmm-intel-command" title="Permalink to this headline"></a></h1>
</div>
<div class="section" id="dihedral-style-charmm-kk-command">
<h1>dihedral_style charmm/kk command<a class="headerlink" href="#dihedral-style-charmm-kk-command" title="Permalink to this headline"></a></h1>
</div>
@ -149,9 +152,9 @@ dihedral_coeff 1 120.0 1 60 0.5
<h2>Description<a class="headerlink" href="#description" title="Permalink to this headline"></a></h2>
<p>The <em>charmm</em> dihedral style uses the potential</p>
<img alt="_images/dihedral_charmm.jpg" class="align-center" src="_images/dihedral_charmm.jpg" />
<p>See <a class="reference internal" href="special_bonds.html#mackerell"><span>(MacKerell)</span></a> for a description of the CHARMM force
<p>See <a class="reference internal" href="#mackerell"><span>(MacKerell)</span></a> for a description of the CHARMM force
field. This dihedral style can also be used for the AMBER force field
(see comment on weighting factors below). See <a class="reference internal" href="special_bonds.html#cornell"><span>(Cornell)</span></a>
(see comment on weighting factors below). See <a class="reference internal" href="#cornell"><span>(Cornell)</span></a>
for a description of the AMBER force field.</p>
<p>The following coefficients must be defined for each dihedral type via the
<a class="reference internal" href="dihedral_coeff.html"><em>dihedral_coeff</em></a> command as in the example above, or in

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doc/dihedral_charmm.txt
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:line
dihedral_style charmm command :h3
dihedral_style charmm/intel command :h3
dihedral_style charmm/kk command :h3
dihedral_style charmm/omp command :h3

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doc/improper_harmonic.html
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@ -127,6 +127,9 @@
<div class="section" id="improper-style-harmonic-command">
<span id="index-0"></span><h1>improper_style harmonic command<a class="headerlink" href="#improper-style-harmonic-command" title="Permalink to this headline"></a></h1>
</div>
<div class="section" id="improper-style-harmonic-intel-command">
<h1>improper_style harmonic/intel command<a class="headerlink" href="#improper-style-harmonic-intel-command" title="Permalink to this headline"></a></h1>
</div>
<div class="section" id="improper-style-harmonic-kk-command">
<h1>improper_style harmonic/kk command<a class="headerlink" href="#improper-style-harmonic-kk-command" title="Permalink to this headline"></a></h1>
</div>

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doc/improper_harmonic.txt
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:line
improper_style harmonic command :h3
improper_style harmonic/intel command :h3
improper_style harmonic/kk command :h3
improper_style harmonic/omp command :h3

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doc/searchindex.js
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