Commit Graph

36746 Commits

Author SHA1 Message Date
00345ce8c3 rename compute local/comp/atom to composition/atom 2023-08-23 14:06:44 -04:00
476446d93c add reference log outputs for ML-HDNNP and add input demoing use with hybrid 2023-08-23 08:58:20 -04:00
174825fe8c fix element mapping bug in pair style hdnnp when used as a hybrid sub-style 2023-08-23 07:21:16 -04:00
2e79beb368 signal that destructors may throw exceptions 2023-08-23 03:37:54 -04:00
aec1f46291 initialize all class members 2023-08-23 03:28:06 -04:00
9999f775cc address CodeQL issue 2023-08-23 03:03:19 -04:00
351a9dd11f Merge remote-tracking branch 'github/develop' into collected-small-changes 2023-08-23 03:02:29 -04:00
c072719a44 Merge pull request #3898 from stanmoore1/reax_kk_bug
Fix bug in Kokkos ReaxFF on GPUs when border comm is on host
2023-08-22 18:57:43 -04:00
17b78d86a6 Merge pull request #3885 from bathmatt/pt_without_device
Made check incase PyTorch didn't define the device
2023-08-22 17:38:54 -04:00
dc5619667f Fix bug in Kokkos ReaxFF on GPUs when border comm is on host 2023-08-22 11:26:12 -06:00
20748b877e Merge pull request #3894 from akohlmey/remove-mpiio
Remove MPIIO package
2023-08-21 11:02:28 -04:00
603d7d28fd make constants and functions static so there are no namespace conflicts with multiple files including it 2023-08-21 05:23:42 -04:00
d230ae49c4 update documentation for removal of MPIIO package 2023-08-20 22:17:03 -04:00
4de7694bbe add removed MPIIO dump styles to deprecated dump styles 2023-08-20 22:03:34 -04:00
a81412f015 remove MPIIO sources and references to them. update Purge.list and build systems 2023-08-20 21:51:33 -04:00
80144c9970 speed up SSAO with OpenMP multi-threading, if available 2023-08-19 20:06:31 -04:00
a86c0ed671 suppress pointless warning by MSVC++ compilers 2023-08-19 17:48:03 -04:00
c1b5fe4e84 reimplement lammps_commands_string() library function with C++ and support for heredocs 2023-08-19 17:48:03 -04:00
b904534ac2 Merge pull request #3889 from akohlmey/image-anti-alias
Implement anti-aliasing for dump image (and dump movie)
2023-08-18 15:52:01 -04:00
283c928aac add note and images to showcase the effect of fsaa and ssao 2023-08-18 14:08:43 -04:00
7febd8c918 Merge branch 'develop' into image-anti-alias 2023-08-18 13:32:23 -04:00
d35cd8625e Merge pull request #3890 from akohlmey/lammps-gui-improvements
More lammps gui improvements
2023-08-18 11:37:19 -04:00
2af8842877 whitespace 2023-08-18 06:40:51 -04:00
0624aa56b9 remove unused file 2023-08-18 01:50:13 -04:00
422b989c1c may only set bond diameter, if there are actual bonds in the system allowed 2023-08-17 22:33:12 -04:00
5528cefe0f move fsaa keyword next to ssao and away from dump_modify
we don't need to reallocate the buffers this way
2023-08-17 19:57:46 -04:00
988b121a96 silence compiler warnings 2023-08-17 16:55:57 -04:00
f4fe28d8d0 change PNG compression from best compression to best speed 2023-08-17 16:42:22 -04:00
aedda9513e document cost of FSAA 2023-08-17 13:11:41 -04:00
a0414f2fc9 update TODO list 2023-08-17 05:38:51 -04:00
6e2a65c4c5 update docs for LAMMPS GUI 2023-08-17 05:26:48 -04:00
4ec5b5776c fix permissions 2023-08-17 02:25:13 -04:00
b7126f523c use counter so that widgets are properly assigned to their grid slots 2023-08-17 02:23:00 -04:00
18aa897430 fix whitespace and include missing icon 2023-08-17 01:38:34 -04:00
b2a8bc07a0 add option to toggle between VDW style representation and licorice style 2023-08-17 01:20:07 -04:00
23f9615ef2 color by element when units setting allows it 2023-08-17 00:41:30 -04:00
37b0ba1d51 import periodic table functions from VMD/molfile plugin 2023-08-17 00:40:00 -04:00
3ac856cc92 add extract_global() and extract_atom() 2023-08-17 00:39:10 -04:00
43347b87ce also recognize integer ranges with : or * as integer 2023-08-17 00:38:46 -04:00
f91dc3e68a implement anti-aliasing for dump image (and dump movie) 2023-08-16 20:24:57 -04:00
4628199041 update todo 2023-08-16 19:10:14 -04:00
2c8a3d87a0 must stop running LAMMPS simulation before we can close the lammps object 2023-08-16 13:06:09 -04:00
ebbce58da6 fix typo 2023-08-16 12:07:43 -04:00
561f682afd support setting image dimensions, have render activity indicator 2023-08-16 08:48:31 -04:00
44f725f61f add tooltips, add run/stop/image buttons to status bar, replace run/stop icons 2023-08-16 07:11:07 -04:00
7c9eda658f fix typo 2023-08-16 03:38:05 -04:00
06e2d5d306 Merge pull request #3883 from akohlmey/lammps-gui-improvements
LAMMPS GUI improvements
2023-08-16 02:17:57 -04:00
cd4642dfb4 Merge pull request #3887 from lammps/compute-prop-grid-proc
Add proc option to compute property/grid
2023-08-15 23:49:33 -04:00
b57f6d9b30 dynamic loaded library crashes currently on macOS 2023-08-15 23:44:14 -04:00
a7f84ef645 Merge pull request #3888 from lammps/example-asphere-tri
Changes to make example script in ASPHERE/tri run smoothly
2023-08-15 23:25:04 -04:00