Commit Graph

2223 Commits

Author SHA1 Message Date
004816a4ba update tests for changed argument names 2025-06-18 07:09:03 -04:00
3f6dfa27bd apply pylint and refactor accordingly 2025-06-18 06:51:17 -04:00
7fb930daed start adding tests for JSON format molecule files 2025-06-15 00:00:59 -04:00
ece4939708 Merge branch 'develop' into fix-set-command 2025-06-04 16:22:45 -04:00
3086e6e0ec Merge branch 'develop' into collected-small-fixes 2025-06-02 20:50:45 -04:00
d7cee3e71d remove undesired "generated" tag 2025-05-31 02:31:25 -04:00
129a3a83e5 Merge branch 'develop' into fix-set-command 2025-05-29 05:21:46 -04:00
be59eb6a70 fix up two more inconsistent definitions 2025-05-28 21:38:14 -04:00
8f07b44dce Merge branch 'cmake-adjustments' of github.com:akohlmey/lammps into cmake-adjustments 2025-05-28 21:35:42 -04:00
3552847957 consistent use of definitions to avoid CMake adding spurious '-D' prefixes 2025-05-28 21:35:33 -04:00
1ddc64b885 eliminate warning (doesn't change results since we don't compute pair forces) 2025-05-28 16:47:55 -04:00
b92414349d update expand_args() unit tester with new error message 2025-05-20 21:49:28 -04:00
271bdc1af7 alternate way to specify defines for MPI tests 2025-05-20 13:56:36 -04:00
380c878e5f Merge remote-tracking branch 'github/develop' into cmake-adjustments 2025-05-19 22:15:51 -04:00
09b174d129 turn off C++ support 2025-05-19 21:15:00 -04:00
031fab210f update unittest for change in compute pair/local 2025-05-15 23:28:46 -04:00
fdd91e597e add a few more tests for extracted global properties 2025-05-13 02:44:05 -04:00
75907ccf91 add support to extract eflag/vflag_atom/global as global properties 2025-05-13 02:32:27 -04:00
7ec7745640 make neighbor list settings, status, and bond/angle/dihedral/improper lists available to library interface 2025-05-05 05:21:18 -04:00
f9a55c0f49 update reference data in test which was updated in KIM database 2025-04-29 08:40:47 -04:00
f8bf6d1ad6 correct a few more issues with unit tests 2025-04-26 02:42:09 -04:00
161776b2c7 recover AtomStyle and SetProperty unit tests 2025-04-26 02:14:10 -04:00
706aa19710 Use type/ratio instead of type/fraction to select charged types 2025-04-25 20:05:09 -04:00
3c5e85a7c0 Merge pull request #4550 from akohlmey/collected-small-fixes
Collected small changes and fixes
2025-04-25 13:46:59 -04:00
73fe2f7915 Update extract(), document, and test 2025-04-22 11:28:17 -04:00
25307b049c Update and rename mol-pair-lj_improved_cut.yaml to mol-pair-lj_pirani.yaml
New name
2025-04-22 14:55:38 +02:00
71da769b11 add force style test 2025-04-18 00:35:01 -04:00
9a08f7b23b add test for indented output 2025-04-17 16:26:03 -04:00
7ca493917a Merge pull request #4542 from akohlmey/add-json-lib
Integrate header-only JSON library
2025-04-17 13:56:16 -04:00
a7760e82e1 Merge pull request #4536 from akohlmey/remove-cmake-tune-flags
Remove CMAKE_TUNE_FLAGS
2025-04-17 11:02:04 -04:00
27d8e103eb move json.hpp class to thirdparty folder and add wrapper for use with LAMMPS 2025-04-16 15:54:59 -04:00
4553108035 add minimal unit test for JSON class 2025-04-15 22:11:44 -04:00
994b7b4937 Merge pull request #4540 from evoyiatzis/fix-adapt-dihedral
extend fix adapt to treat dihedrals
2025-04-13 05:39:58 -04:00
af718e8162 remove one more use to CMAKE_TUNE_FLAGS 2025-04-07 22:50:38 -04:00
99b484a0cc add Kokkos/OpenMP version of mliap unified test 2025-04-07 18:06:31 -04:00
c505bfbdfe make sure OpenMP has a sufficient number of threads allocated 2025-04-07 18:06:07 -04:00
499192a1b2 restore option to request neighbor lists with neighbors of ghosts 2025-04-07 16:27:16 -04:00
fe9915f307 disable support for neighbors of ghosts. see also bff980b56f 2025-04-07 14:37:35 -04:00
2b38b6d1c0 extract() implementation for dihedral class2 2025-04-07 11:35:20 +02:00
e93709d34e extract() implementation for dihedral helix 2025-04-07 11:20:53 +02:00
7655a4cb84 extract() implementation for dihedral multi/harmonic 2025-04-07 09:30:44 +02:00
e956e5ccda extract() implementation for dihedral charmm and charmmfsw 2025-04-07 09:24:44 +02:00
55964c1233 extract() implementation for dihedral cosine squared restricted 2025-04-07 09:11:42 +02:00
27ac8c0ea1 extract() implementation for dihedral opls 2025-04-07 09:05:42 +02:00
6267389801 must force OMP_NUM_THREADS=1 for all tests to pass 2025-04-06 11:30:41 -04:00
da2bc03ae6 do explicit loop over nlocal to avoid out-of-bounds access with implicit loop 2025-04-06 06:21:39 -04:00
e0847f2195 fix memory leak in test 2025-04-05 00:26:20 -04:00
d1dd05bf4e update unit test for quadratic dihedral 2025-04-04 17:19:54 +02:00
ccd6eeb8af unit test 2025-04-04 16:53:57 +02:00
8df9f3404b Merge pull request #4467 from evoyiatzis/patch-2
extend fix adapt to treat improper angles
2025-04-02 12:18:40 -04:00