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010b1f7434
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more conversion of parsed-literal to code-block and a bunch of other issues
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2020-03-12 08:11:10 -04:00 |
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524b37598f
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correct various misspelled words and remove corresponding false positives
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2020-03-12 06:25:42 -04:00 |
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1372c20d94
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Merge branch 'DOI' of github.com:e-kwsm/lammps into doc-cleanup
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2020-03-12 05:43:44 -04:00 |
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8af9d40392
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Update DOI resolver
https://www.doi.org/doi_handbook/2_Numbering.html#htmlencoding
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2020-03-12 16:53:24 +09:00 |
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23a402ddd3
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convert all remaining compute styles to use code-block instead of parsed literal
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2020-03-12 01:56:13 -04:00 |
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c6f846b925
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converter tool for inlining external math is no longer needed
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2020-03-12 01:20:30 -04:00 |
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7e656b6cea
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convert more LAMMPS script examples to use code-block instead of parsed-literal
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2020-03-12 01:11:38 -04:00 |
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2775ebeb9d
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update trilinos URL
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2020-03-12 00:47:00 -04:00 |
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8a799c4b5f
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update cslib URLs to use https://
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2020-03-12 00:46:50 -04:00 |
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30817162b9
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update moltemplate URL to https://
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2020-03-12 00:42:23 -04:00 |
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2c3d196ce8
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remove broken link
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2020-03-12 00:41:57 -04:00 |
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3317f90940
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update plumed URLs to use https://
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2020-03-12 00:32:44 -04:00 |
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b961aa0542
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update lammps.sandia.gov URLs to use https://
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2020-03-12 00:28:28 -04:00 |
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6dd9a507ef
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update PyMol URLs
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2020-03-12 00:21:20 -04:00 |
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23569e67a0
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update Ensight URL
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2020-03-12 00:20:59 -04:00 |
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e58aeebcce
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update URLs for pizza.py homepage
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2020-03-12 00:13:58 -04:00 |
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667c9f2a9f
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update AtomEye related URLs
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2020-03-12 00:08:57 -04:00 |
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d0f57289fc
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finish updating docs for fixes using code-block plus a few other improvements
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2020-03-11 12:58:57 -04:00 |
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5029bc9e1e
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more conversions from parsed-literal to code-block
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2020-03-11 10:19:19 -04:00 |
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8546bb51bf
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Layout images so they show up side-by-side in html and pdf and adapt to screen/paper size
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2020-03-11 10:18:48 -04:00 |
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33996d9bac
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Merge pull request #1923 from akohlmey/collected_small_fixes
Collected small fixes for the next patch
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2020-03-10 19:38:40 -04:00 |
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1f4725d652
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replace parsed-literal with code-block where appropriate. typeset keywords in cursive
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2020-03-10 16:54:04 -04:00 |
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2d329a8b76
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typeset symbols in water model howtos
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2020-03-10 16:20:52 -04:00 |
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ae9255e057
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collapse multiple empty lines into a single empty line
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2020-03-10 15:56:11 -04:00 |
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e643e88913
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remove trailing whitespace from documentation sources
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2020-03-10 15:51:06 -04:00 |
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e9f5b8246a
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whitespace fixes
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2020-03-10 15:18:00 -04:00 |
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5ffc12ffc0
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Merge remote-tracking branch 'github/master' into collected_small_fixes
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2020-03-10 15:16:07 -04:00 |
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b9ff623c16
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Merge pull request #1920 from jguenole/fire-debug
fire bug fix to avoid crashes due to lost atoms
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2020-03-10 15:08:58 -04:00 |
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7b7ca000b3
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Merge pull request #1922 from weinbe2/snap-scratch
SNAP optimizations - hierarchical parallelism, scratch memory, data layout transformations
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2020-03-10 15:07:46 -04:00 |
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9d7b15631d
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Add contributing author
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2020-03-10 09:20:54 -06:00 |
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4e31d622ce
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Whitespace and comment cleanup
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2020-03-10 09:11:29 -06:00 |
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66c019e78b
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more explicitly describe how force/virial depend on random numbers
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2020-03-10 06:43:13 -04:00 |
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d2986b7495
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update CMake presets
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2020-03-09 11:04:26 -04:00 |
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a0fb7c812c
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Merge branch 'master' into collected_small_fixes
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2020-03-09 10:53:42 -04:00 |
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3be6347ad4
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Merge pull request #1924 from akohlmey/rename-user-meso
Rename USER-MESO package to USER-MESODPD
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2020-03-09 10:53:22 -04:00 |
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740717d114
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add false positives
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2020-03-09 10:00:14 -04:00 |
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a6086c279b
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rename USER-MESO package to USER-MESODPD and update related files and folders
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2020-03-09 09:48:49 -04:00 |
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536e7a969a
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silence compiler warning and provide extra comment about optimization
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2020-03-09 09:17:49 -04:00 |
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45902772b7
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Merge branch 'minimizer' of github.com:yafshar/lammps into collected_small_fixes
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2020-03-09 09:15:40 -04:00 |
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475b7dc4f4
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provide access to number of local data rows for fixes
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2020-03-07 10:58:35 -05:00 |
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6f1d913e7e
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simplify library interface code to extract peratom or local data from computes
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2020-03-07 10:57:51 -05:00 |
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943540b015
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bugfix for extracting length of local data through python interface
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2020-03-07 10:19:03 -05:00 |
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a3eee419a1
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minor optimization, avoiding double computation and extra communication
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2020-03-06 09:01:28 -06:00 |
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ddc36973f0
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final reference info
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2020-03-06 14:55:52 +01:00 |
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980ef8095a
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include USER-REACTION in "most" preset
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2020-03-05 22:57:17 -05:00 |
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bc8fa088be
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Merge pull request #1822 from jrgissing/bond/react-new-examples-and-package
Bond/react: new examples and repackage
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2020-03-05 22:49:53 -05:00 |
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21f2ec3a25
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Merge branch 'master' into bond/react-new-examples-and-package
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2020-03-05 20:08:19 -07:00 |
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8c48a27c1d
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fix another display issue in pair style srp docs
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2020-03-05 15:39:13 -05:00 |
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c38380afc2
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bugfix and small tweak for pair style srp docs
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2020-03-05 15:36:15 -05:00 |
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1fb54c307c
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Merge pull request #1918 from akohlmey/collected-small-fixes
Collected small fixes for the next patch
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2020-03-05 15:16:50 -05:00 |
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