59e3b4c5ba
Fixed bug in lammps.py
2019-10-24 16:12:23 -06:00
2b42428d28
Extend lib interface to set fix external callback
...
This allows creating a callback in Python and attaching it to
a fix external instance.
2019-08-20 14:04:49 -06:00
77e323d28c
prefix option in install.py not needed
2019-03-26 21:55:07 -04:00
0edb82eb5e
update format
2019-03-25 17:14:58 -04:00
b0a741fc58
add support for --prefix to python module installer
2019-03-25 16:51:35 -04:00
f69173f410
partial documentation update
2019-03-22 17:25:03 -04:00
0f030acc59
refactoring python module installer script to be (more) platform neutral and compatible with conventional make and CMake builds
2019-03-22 11:59:15 -04:00
e582c0d4e5
Update lammps.py
2019-02-12 08:20:54 +01:00
f5e3c53880
Update install.py
2019-02-12 08:08:22 +01:00
e7c1ca1fca
Revert changes
2019-02-12 08:07:28 +01:00
277f8356b1
Update lammps.py
2019-02-09 08:46:22 +01:00
0fade44b43
Update install.py
2019-02-09 08:45:03 +01:00
b9d8b5f501
lib extension for Mac Os X
2019-02-04 09:23:29 +01:00
7c2a61ad4c
Define lib_ext
2019-02-02 17:55:09 +01:00
562bc4e584
Update install.py
2019-02-02 13:05:26 +01:00
1927659fb1
fix cut-n-paste bug in extract_setting() method
2019-01-24 17:55:37 +01:00
49da946398
fix bug reported in https://github.com/lammps/lammps/issues/1294
2019-01-21 05:52:28 -05:00
4b0382cadd
Fixes issue #1069
2018-08-21 14:45:01 -04:00
d00eaef070
Allow 'set' command to change atom velocities
2018-07-13 23:05:44 -04:00
43ffee980d
fix typo in python module
2018-06-29 19:07:14 -04:00
19f81e0802
Add library functions for accessing LAMMPS configuration
2018-06-25 23:56:18 -04:00
5bf8e1bc5b
add ability to retrieve the number of local rows for computes returning local data
...
this is done supporting the combination of type == 2 with style == 0,
i.e. a local scalar, which is not available in C++ (but there one can
access the compute style data member directly. for the python interface,
the pointer is automatically dereferenced and returned as a c_int.
2018-04-19 18:37:15 -04:00
164537cf37
whitespace cleanup
2018-04-19 18:30:51 -04:00
d14c16a47c
a few new lib interface methods
2018-03-23 13:34:22 -06:00
62d446668c
lammps.py: inconsistent use of tabs and spaces in indentation
2018-03-08 16:23:44 -07:00
a1bb877d55
correct commented out MPI examples
2018-03-07 11:17:03 -05:00
fd1edaf04f
allow for mpi4py version 2 or 3 in Python wrapper
2018-03-07 08:52:46 -07:00
f914da62e0
fix typo
2018-02-06 16:57:27 +01:00
2a131d1416
Merge remote-tracking branch 'upstream/master' into fix_python_move
2017-12-15 13:56:54 -05:00
93be2d264e
Detect correct integer type in lammps python interface
2017-12-02 00:39:15 -05:00
6f7bd78ea2
Fixes issue #701
...
PyLammps now supports thermo_style entries such as c_msd[4]
2017-11-29 01:06:44 -05:00
45aa7de171
Limit IPython autocomplete to known commands and properties
2017-10-12 14:43:17 -04:00
0b5a2e199d
Add way of getting correct ctypes integer type for bigint, tagint, and imageint
2017-09-04 20:01:31 -04:00
09bb687918
Correct indentation
2017-09-04 20:01:04 -04:00
bb3ee752e5
Added optional numpy access to atom data
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The library interface was extended to provide direct access to atom data using
numpy arrays. No data copies are made and numpy operations directly manipulate
memory of the native code.
To keep this numpy dependency optional, all functions are wrapped into the
lammps.numpy sub-object which is only loaded when accessed.
2017-09-04 19:59:50 -04:00
d3169eeab3
Remove Make.py reference in PyLammps examples
...
Also fixes some regressions due to command syntax changes
2017-07-31 13:56:20 -06:00
71553cf732
Fix PyLammps regression after output.cpp change
2017-07-31 13:53:41 -06:00
9a027a01da
Add Python 3 compatibility to PYTHON package
2017-04-11 20:24:42 -04:00
cda8213892
Added Python matplotlib plot example
2017-03-16 01:41:28 -04:00
ef940d226c
Improve Python 3 compatibility of pizza tools and simplify read_snapshot code
2017-03-16 01:38:05 -04:00
36da9223ec
Fix dump cfg in vizplotgui_atomeye.py example
2017-03-15 22:55:51 -04:00
eb29ef32b1
Fix space/tab error in pizza/gl.py
2017-03-15 22:43:00 -04:00
29550d472d
Fix dump cfg in viz_atomeye.py example
2017-03-15 22:31:14 -04:00
79cae51156
Document property 'uses_exceptions' of Python interface
2017-03-15 22:20:30 -04:00
a210867025
Fixes lammps_create_atoms library function and its Python interface variant
...
The interface of that function has changed and includes two additional
parameters, which haven't been added to the Python interface either.
This showed up by trying to run the simple.py example.
2017-03-15 22:13:06 -04:00
0262a54ecf
Fix Python 3 compatibility by encoding strings passed as c_char_p
2017-03-15 22:00:43 -04:00
359af419a7
Fix typo in python README
2017-03-07 00:58:35 -05:00
d6800405a5
Fix more typos in examples
2017-03-07 00:57:23 -05:00
e261bef7bb
Spelling fixes in source files
2017-03-05 18:30:39 -05:00
2383c31f15
Created PyLammps documentation
...
Based on material presented during MD Workshop at Temple University in
August 2016.
2016-11-18 23:58:57 -07:00
