Commit Graph

18644 Commits

Author SHA1 Message Date
0b7c391dfd smooth restart when using rate_limit
breaks backward compatibility of restart files (probably can be avoided)
2022-11-04 00:49:26 -04:00
736b420a49 reaction rate limit option 2022-11-01 18:03:30 -04:00
23353208f2 check that bond is actually in map 2022-11-01 15:11:19 -04:00
fe6cf36101 prevent multiple compute evaluations on a timestep 2022-11-01 15:11:19 -04:00
5e9b4d8678 actually evaluate bond/local compute value
(even when not printed on that timestep)
2022-11-01 15:11:19 -04:00
d090fce262 bond/react: per-bond custom constraint 2022-11-01 15:11:19 -04:00
9e79a1ef76 non-'bond/react ' changes 2022-11-01 15:06:06 -04:00
a001707b22 Merge pull request #3503 from akohlmey/refactor-pair-only
Refactor handling of pair/only flag for GPU and KOKKOS
2022-11-01 12:14:59 -04:00
05aca2bced Merge pull request #3507 from hammondkd/thermo_mod_range
Support thermo_modify format column index ranges
2022-11-01 05:46:04 -04:00
37adaa7409 Merge branch 'develop' into refactor-pair-only 2022-10-31 21:48:10 -04:00
ccea984c4c expand pair_only_flag processing to also apply to other suffix handlers 2022-10-31 21:47:40 -04:00
135c6f24ad Merge branch 'develop' into fortran-expansion 2022-10-31 17:57:33 -04:00
58c2f25b45 Merge pull request #3504 from akohlmey/library-plugin-update
Update example for coupling LAMMPS as a dynamically loaded library
2022-10-31 17:52:34 -04:00
27a93f12d5 simplify and make test more specific 2022-10-31 15:00:37 -04:00
5195a7385c Merge pull request #3501 from yury-lysogorskiy/bugfix/empty-spatial-domain
BUGFIX:  fix pair  and empty spatial domains
2022-10-31 12:23:35 -04:00
39a6a27066 Replaced "not" with "!" and "and" with "&&" (Windows builds?) 2022-10-30 18:25:16 -05:00
87590ad339 Merge branch 'lammps:develop' into fortran-expansion 2022-10-30 15:30:59 -05:00
745f90cb71 merged conflicts in thermo.cpp 2022-10-30 14:34:43 -05:00
78910eb0e1 add comment that this file needs to be updated when APIs are added 2022-10-28 21:13:50 -04:00
e0181e8c46 refactor handling of pair/only flag for GPU and KOKKOS 2022-10-28 16:38:11 -04:00
e70ccf454d fix cut-n-paste bug 2022-10-28 10:11:50 -04:00
dc2b0f1def Merge branch 'develop' into collected-small-changes 2022-10-28 09:30:17 -04:00
1de74508c3 Merge pull request #3475 from akohlmey/refactor-testing
Refactor computes and fixes to use array of structs instead of many index arrays
2022-10-27 17:07:52 -04:00
3bfdc0aae9 initialize pointer to null 2022-10-27 17:05:55 -04:00
e2f263b827 protect against division by zero 2022-10-27 17:04:10 -04:00
3545b491ee Merge branch 'lammps:develop' into fortran-expansion 2022-10-27 14:15:47 -05:00
a66f411edc add support to detect the BuildID of Windows 10 22H2 2022-10-27 12:43:14 -04:00
5824534ac6 use symbolic constants Comm::BRICK / Comm::TILED for Comm::style 2022-10-27 07:03:25 -04:00
a714a60ed3 we need to use Error::one() since not all MPI ranks might trigger 2022-10-26 16:14:48 -04:00
e4ca652648 BUGFIX: raise error only if some atoms in current spatial domain but extracted per-atom array is still nullptr 2022-10-26 18:50:08 +02:00
e68efc039f Resolved merging conflicts in three files 2022-10-25 14:37:33 -05:00
d96bfcdf06 Merge branch 'develop' into refactor-testing 2022-10-24 20:07:58 -04:00
fc59d7d3ca update LAMMPS developer contact info 2022-10-24 18:28:12 -04:00
34d70dd753 Merge branch 'develop' into new-pair_style-ylz 2022-10-24 18:27:24 -04:00
248b7383c7 Merge remote-tracking branch 'github/develop' into collected-small-changes
# Conflicts:
#	src/DIPOLE/pair_lj_cut_dipole_long.h
#	src/OPENMP/fix_nvt_sllod_omp.h
#	src/PHONON/fix_phonon.h
#	src/SPIN/pair_spin_dipole_cut.h
#	src/SPIN/pair_spin_dipole_long.h
#	src/STUBS/mpi.h
#	src/UEF/fix_nh_uef.h
#	src/fix_nvt_sllod.h
#	tools/coding_standard/homepage.py
2022-10-24 15:50:50 -04:00
0146a19ed3 silence unrecognized pragma warnings 2022-10-24 15:42:17 -04:00
27b37ebad0 Merge pull request #3495 from akohlmey/update-email
Update contact email address in LAMMPS sources
2022-10-24 13:49:31 -04:00
3fe18c70ad Merge pull request #3497 from jrgissing/bond/react-create_atoms_error_check
Bond/react: create atoms error check
2022-10-24 13:17:28 -04:00
ffa0460ca0 Merge branch 'lammps:develop' into fortran-expansion 2022-10-24 11:53:19 -05:00
2132b1d904 update developer reference text 2022-10-24 11:08:26 -04:00
b939ea55f6 allow -kokkos on g 0 without GPU support, report GPUs only if ngpu > 0 2022-10-24 05:05:49 -04:00
cd621e74f5 it is safer to do a >= comparison instead of == for floating point numbers 2022-10-22 15:03:37 -04:00
94627b3ef7 remove redundant curly braces 2022-10-22 14:54:53 -04:00
b96028eaf2 Update pair_threebody_table.cpp
Correcting for hard coded ntheta = 79 in the extreme case that theta is exactly equal to 180.0 degrees.
2022-10-22 16:38:37 +02:00
01a0cb35a3 modernize calls to access the list of fixes in the Modify class 2022-10-22 08:20:16 -04:00
43e3dc7a9e use inline insertion sort for short array 2022-10-22 08:10:00 -04:00
d038b049c9 avoid superfluous calls to utils::strdup and improve error messages 2022-10-22 08:09:23 -04:00
5725e3cb1d silence compiler warning about not copying the final null byte 2022-10-22 08:08:16 -04:00
007e6ffd95 bond/react: create atoms error check
check that post-reaction template has 'Coords' section if it has 'CreateIDs' section
2022-10-22 00:16:22 -04:00
12baf65d7a correct implementation of quartic potential in pair style list 2022-10-21 02:25:40 -04:00