Commit Graph

22697 Commits

Author SHA1 Message Date
52715cc804 Merge branch 'master' into compute-mliap 2020-07-16 18:35:49 -04:00
ad02d7a5e0 Merge pull request #2219 from lammps/write-bonus-data
Enable write_data for atom styles with bonus data. Add tester code for that and many related cleanups and bugfixes.
2020-07-16 18:21:15 -04:00
34fdfb6b81 allow fix nvt/body npt/body and nph/body to be used for groups other than "all" 2020-07-16 17:56:56 -04:00
92f194ac93 make sure output buffer is initialized 2020-07-16 17:32:17 -04:00
f344629a29 simplify 2020-07-16 17:31:54 -04:00
209d3ff3ff fix typo 2020-07-16 17:31:46 -04:00
35b030015d Merge branch 'master' into write-bonus-data 2020-07-16 12:15:59 -04:00
9a13ad5230 Merge pull request #2206 from ohenrich/mc-fix-bond-create-angle
New fix_bond_create_angle class
2020-07-16 11:54:04 -04:00
ee10b200e0 Merge branch 'master' into write-bonus-data 2020-07-15 22:10:38 -04:00
25a836b729 reformat and rephrase text about availability of fix bond/create/angle only keyword 2020-07-15 21:32:22 -04:00
52b30b11ec add fix bond/create/angle to list in Fix command page 2020-07-15 21:31:22 -04:00
d7ef1b007d Merge branch 'master' into mc-fix-bond-create-angle 2020-07-15 21:21:35 -04:00
29e2c82d71 fix broken line wrap. 2020-07-15 21:00:43 -04:00
4dc61f7f2a make frenkel book anchors globally unique 2020-07-15 20:56:50 -04:00
300beb819b change from DOS/Windows CR/LF to LF 2020-07-15 20:54:58 -04:00
3287f1cddc fully integrate fix widom into manual. fix some style issues and reindent 2020-07-15 20:54:17 -04:00
94464f5390 Merge branch 'master' into widom 2020-07-15 20:46:39 -04:00
581d47a10a move fix widom from USER-MISC to MC package 2020-07-15 20:46:31 -04:00
438346a936 Merge pull request #2237 from yafshar/memory
Fix the system-dependent function call to `malloc_usable_size`.
2020-07-15 20:42:49 -04:00
dff2e93e2a Merge pull request #2236 from stanmoore1/kk_qeq_nevery
Fix issues in Kokkos fix qeq/reax
2020-07-15 20:41:00 -04:00
508a38a7fa Fix the system-dependent function call to malloc_usable_size.
Fix the system-dependent function call to get the size of the
block of memory allocated from the heap.
2020-07-15 17:49:49 -05:00
71344aaa28 Merge branch 'master' of https://github.com/lammps/lammps into kk_qeq_nevery 2020-07-15 16:18:56 -06:00
181b7cf34f Merge branch 'master' into write-bonus-data 2020-07-15 18:14:49 -04:00
0105d1caa5 Merge pull request #2212 from akohlmey/compute-chunk-scalar
Get number of chunks from compute chunk/atom
2020-07-15 18:13:48 -04:00
1021f5753b Merge pull request #2218 from lammps/reset-molecules
new reset_mol_ids command
2020-07-15 18:09:02 -04:00
dee38c26b3 Changed paragraph as per request 2020-07-15 22:51:51 +01:00
a392f212ee Fix issues in Kokkos fix qeq/reax 2020-07-15 15:49:26 -06:00
73a076daf3 don't set CMAKE_TUNE_FLAGS to anything by default 2020-07-15 16:19:48 -04:00
8949b2f165 add recently added names to false positives list 2020-07-15 15:31:12 -04:00
bf37e6aae1 Merge branch 'master' into write-bonus-data 2020-07-15 15:20:34 -04:00
7a312ca8d8 Merge pull request #2231 from stanmoore1/reax_hybrid
Fix issue with Kokkos ReaxFF and pair hybrid
2020-07-15 14:35:35 -04:00
28ee835103 Update fix_widom.rst 2020-07-15 20:35:15 +02:00
1a738f80e2 Update false_positives.txt 2020-07-15 20:14:17 +02:00
4cbe095444 Merge pull request #2234 from akohlmey/collected-small-fixes
Collected small fixes and unittest updates
2020-07-15 14:13:21 -04:00
41a7557cc9 first attempt of a documentation file 2020-07-15 18:53:04 +02:00
74aa1d482a Add missing sync 2020-07-15 10:48:39 -06:00
b37b45c817 use fmtlib to remove BIGINT_FORMAT 2020-07-15 11:55:08 -04:00
aa82608142 print warning for unknown/unsupported CUDA versions 2020-07-15 11:28:33 -04:00
a082895b90 update CMake script for GPU package to include handling of Arch 8.0 and CUDA 11 2020-07-15 11:08:06 -04:00
2580ca78f4 guard better against 32-bit overflows for reax/c lists 2020-07-15 00:13:33 -04:00
e3818f031b don't use error class if pointer variable has not been initialized 2020-07-15 00:12:31 -04:00
2fb0f95324 check against BODY package for body styles 2020-07-14 18:41:52 -04:00
ad818717cc complete tester module for atom style body/nparticle 2020-07-14 18:36:50 -04:00
a7a63ee3fb Merge branch 'write-bonus-data' of github.com:lammps/lammps into write-bonus-data 2020-07-14 16:48:01 -04:00
d37bb0fd6f update intel compiler requirements and document alignment issues 2020-07-14 16:24:17 -04:00
449d7be8f8 updated rules for rounded body particles 2020-07-14 13:25:17 -06:00
1ddd8aa97c Merge branch 'master' into collected-small-fixes 2020-07-14 14:00:24 -04:00
d3392dba45 update tester some more 2020-07-14 13:59:55 -04:00
fd2b5b1cd8 switch completed section from EXPECT to ASSERT 2020-07-14 12:45:54 -04:00
bc3860b462 must advance buffer while package bonus items, but only when a buffer is given 2020-07-14 12:45:22 -04:00