Commit Graph

22697 Commits

Author SHA1 Message Date
b33974cd19 add code to check for duplicate atom IDs in Bodies section 2020-07-14 12:44:50 -04:00
be440c7125 revert incorrect zeroing of non-existing inertia array elements 2020-07-14 12:44:24 -04:00
dcbdc7452b Don't need virtual keyword 2020-07-14 09:57:04 -06:00
d6e6b840e9 update body/nparticle tester 2020-07-14 11:06:06 -04:00
548629958e zero all six moments of inertia if small. 2020-07-14 11:05:44 -04:00
001dcb6bb1 Fix issue with Kokkos ReaxFF and pair hybrid 2020-07-14 09:02:57 -06:00
9068d17afc Merge pull request #2229 from ellio167/pair_kim_before_box
Update pair_kim.cpp so settings() may come before box is defined
2020-07-14 10:24:05 -04:00
113825f8fc silence compiler warning 2020-07-14 08:12:51 -04:00
20824203ab Merge branch 'write-bonus-data' of github.com:lammps/lammps into write-bonus-data 2020-07-14 08:11:29 -04:00
18928c6602 start writing tester for body/nparticle 2020-07-14 08:11:18 -04:00
4b9c2ab1f1 start writing tester for body/nparticle 2020-07-14 07:21:25 -04:00
a88237df99 source code for fix widom 2020-07-14 13:17:20 +02:00
ea1d447703 fix bug in tester for atom style tri 2020-07-13 21:49:18 -04:00
5a73b1de98 fix typo, reformat paragraph 2020-07-13 21:48:15 -04:00
e5d532c2c1 simplify and make more readable using utils:: functions 2020-07-13 18:59:21 -04:00
40e3fcd750 tweak output format 2020-07-13 18:58:43 -04:00
46675361a6 remove unused class members 2020-07-13 18:58:35 -04:00
315c829bd2 tweak box output format to include decimal point 2020-07-13 15:59:47 -04:00
c589dd5894 consistent initialization and setting of _nthreads and comm->nthreads 2020-07-13 15:59:29 -04:00
6c28adcf3b make sure _need_tag is initialized 2020-07-13 15:59:05 -04:00
da66516dec use references when creating styles 2020-07-13 09:40:58 -04:00
3847a3000c paranoia 2020-07-12 21:40:30 -04:00
f8ad39e7d1 simplify fix generation for package commands 2020-07-12 21:40:22 -04:00
1c5c2d8f22 Merge branch 'master' into reset-molecules 2020-07-12 20:36:34 -04:00
db289ba0b3 update all force style reference results after refactoring of test codes 2020-07-12 20:36:10 -04:00
24b5cd7dec rename test programs to be consistent with the other programs in the unittest tree 2020-07-12 19:22:14 -04:00
9cbb2e9df5 refactor force-style tester programs to get rid of stringstream and local buffers
this uses now fmtlib and also outputs forces sorted by atom id
similarly, for all tests it is make certain that the local tag variable is updated
2020-07-12 19:17:51 -04:00
38011f6ac4 add test for pair style kim 2020-07-12 17:21:35 -04:00
b65f6b3b61 Merge branch 'pair_kim_before_box' of github.com:ellio167/lammps into collected-small-fixes 2020-07-12 16:36:00 -04:00
ed1bdb8ed4 update output formatting 2020-07-12 16:33:47 -04:00
00413ae956 add test for atom style tri 2020-07-12 16:32:59 -04:00
8f95b4a5d9 add tests for deleted bonds and angles to bond/angle tests suites 2020-07-12 15:48:21 -04:00
60f078a8f9 fix buffer size and format bugs in atom_vec_tri.cpp 2020-07-12 15:46:56 -04:00
66274e7863 Update pair_kim.cpp so settings() may come before box is defined
Addresses #2215
2020-07-12 14:23:47 -05:00
116c2a56ca Removed old files 2020-07-11 21:00:41 -06:00
031cae8e49 Fixed spelling errors 2020-07-11 20:31:38 -06:00
38d9c0bedf tweak output formatting 2020-07-11 21:44:31 -04:00
9e1d560fda refactor using fmtlib and utils:: 2020-07-11 21:44:13 -04:00
095c6a9850 Finished cleaning up and testing. MLIAPData class is now fully integrated with ComputeMLIAP and PairMLIAP 2020-07-11 19:01:16 -06:00
5f14d5c87f must not override flag for negative angles and bonds 2020-07-11 18:36:19 -04:00
25e54bd68e Merge branch 'master' into write-bonus-data 2020-07-11 18:31:44 -04:00
284b1618f9 Merge pull request #2227 from akohlmey/collected-small-fixes
Collected small updates and bugfixes
2020-07-11 18:30:27 -04:00
83291fdd67 may not use pair_style kim before box is defined
NOTE: this will not happen when the kim_init and kim_interactions commands are used.
2020-07-11 18:07:25 -04:00
f969d9ab72 add space for terminating NULL byte in MPIIO dump styles.
closes #2225
2020-07-11 13:19:08 -04:00
f307d7f5f9 count total number of styles including aliases, suffixes, and undocumented 2020-07-11 13:18:44 -04:00
cd0b034cab adjust regex for removed styles to correctly handle command styles 2020-07-11 13:18:33 -04:00
b3060bc48e add suppressions for googletest 2020-07-11 13:18:14 -04:00
e42342ff51 zero out additionally allocated struct Param storage 2020-07-11 13:18:04 -04:00
8359a4384a more OpenMPI suppressions 2020-07-11 13:17:51 -04:00
c6dc8b5414 fix initialition issue 2020-07-11 13:17:39 -04:00