Commit Graph

22697 Commits

Author SHA1 Message Date
eb60b049fc add endpoint gradients for two bond tables 2020-05-30 21:49:42 -04:00
91272e7654 output endpoint gradient for some angle tabulations 2020-05-30 21:36:47 -04:00
bb8f6e94d3 Merge pull request #2113 from rbberger/tokenizer
Refactoring to reduce strtok usage
2020-05-30 21:13:12 -04:00
0f6e963058 add a whole bunch of angle style tests 2020-05-30 21:10:48 -04:00
69ba5ea9f0 use a smaller bond table 2020-05-30 21:05:03 -04:00
814082a23b Merge pull request #2105 from ndtrung81/rigid-nve-norot
Fixed an issue with fix rigid/nve for bodies with very small values of inertia moments
2020-05-30 19:49:08 -04:00
f33584cfb2 fix missing factor of 2 bug in single function 2020-05-30 18:37:54 -04:00
f4431d0525 remove dead code 2020-05-30 18:00:23 -04:00
bd4d4bc015 update bond/angle yaml files for changed equilibrium keyword syntax 2020-05-30 17:51:29 -04:00
1042e16423 change format for equilibrium values and update writer and reader code, so it will become compatible with class2 angles/dihedrals/impropers 2020-05-30 17:50:38 -04:00
07163a710a correct bond table coefficients to find the table file 2020-05-30 17:22:33 -04:00
e32409d32c add tests for most bond styles except FENE type bonds 2020-05-30 10:44:40 -04:00
1452e6dfca reduce displacements in single test for pair styles 2020-05-30 10:23:52 -04:00
4c0ce402c1 fix bug in bond style gromos/omp 2020-05-30 10:23:25 -04:00
fac897587f Checked for zero inertia moments in a simpler way, similar to what is done in mq_to_omega() 2020-05-30 07:42:34 -05:00
2b960d94ec Fix pair_comb3 2020-05-30 08:01:39 -04:00
1ec179e80a add a few more test inputs 2020-05-29 23:47:15 -04:00
43171052d5 fix multiple bugs in pair style tester for Pair::single() 2020-05-29 23:46:37 -04:00
8409e9d2be Merge pull request #2118 from akohlmey/pair-hybrid-better-check
Better argument parsing of pair style hybrid
2020-05-29 22:54:34 -04:00
549ffda4d8 implement better pair style name detection in pair style hybrid arguments 2020-05-29 20:52:21 -04:00
40cf106b8f Fix segfault when running with MPI 2020-05-29 19:57:47 -04:00
7a9590f007 More whitespace 2020-05-29 18:04:20 -04:00
636a1bffe3 Fix whitespace 2020-05-29 17:25:41 -04:00
447784212a Remove d0 in float numbers in ffield.comb 2020-05-29 17:14:41 -04:00
e4d6970ac1 Fix whitespace 2020-05-29 16:32:17 -04:00
8e1a6bc706 Update pair polymorphic 2020-05-29 16:12:19 -04:00
d173ea4ad9 Merge pull request #2114 from akohlmey/more-unittest-changes
More updates and corrections for unit tests
2020-05-29 15:33:30 -04:00
1375c154f9 Update pair eim 2020-05-29 14:58:04 -04:00
10b0d60709 Fix typo 2020-05-29 14:56:10 -04:00
c34501c137 Merge pull request #2116 from jdevemy/master
Test to avoid bad delete and Seg Fault
2020-05-29 11:34:14 -04:00
1984092135 Test to avoid bad delete and Seg Fault 2020-05-29 15:25:05 +02:00
2a4bd9ef53 small tweaks and documentation update to coverage cleaning targets 2020-05-29 08:33:34 -04:00
7bcf50b129 mention reset_coverage data 2020-05-29 08:26:26 -04:00
c2ab177c3a add some explanations and figures for code coverage 2020-05-29 08:24:05 -04:00
30020594df add custom target to remove/reset collected coverage data 2020-05-29 08:23:25 -04:00
0c503ab122 Move coverage html into folder 2020-05-29 08:23:08 -04:00
99c0c1ace1 simplify parsing of equilibrium data 2020-05-29 08:22:34 -04:00
7d62fd5106 remove debug code 2020-05-29 08:22:23 -04:00
797ba373c4 simplify reading key/value pairs from string 2020-05-28 22:38:23 -04:00
08ee1cb4fa add single test to angle_style, add support for equilibrium data 2020-05-28 22:38:07 -04:00
47e4da4903 add support for writing/reading equilibrium bond/angle data 2020-05-28 22:20:43 -04:00
6ed4103365 synchronize flow of control and formatting between pair_style, bond_style and angle_style 2020-05-28 21:11:38 -04:00
9fc6abb2ef add tests for pair style polymorphic 2020-05-28 20:43:26 -04:00
5a4bbcc37a Update pair vashishta 2020-05-28 16:17:15 -04:00
cadc374e0b Update pair nb3b harmonic 2020-05-28 16:05:56 -04:00
e206647717 Update pair gw zbl 2020-05-28 15:56:36 -04:00
607581e7f3 Use correct error function 2020-05-28 15:53:33 -04:00
2632d30970 Update pair gw 2020-05-28 15:44:53 -04:00
7d61fbc68b Update pair adp 2020-05-28 15:08:48 -04:00
5bdc3e9f84 Remove unused PairEAM::grab 2020-05-28 14:37:52 -04:00