Commit Graph

43529 Commits

Author SHA1 Message Date
1352257cf4 Use modern C++ code pattern to build c-style argument list
This was suggested by GitHub Copilot

Co-authored-by: Copilot <175728472+Copilot@users.noreply.github.com>
2025-04-23 05:51:53 -04:00
6629ecff2d implement function to add request for single occasional neighbor list 2025-04-22 21:44:45 -04:00
9e9caf7d14 dummy implementation of single neighbor list build 2025-04-22 16:02:51 -04:00
dbe98e2cfb update embedded JSON class to version 3.12.0 2025-04-22 10:37:29 -04:00
0ff17967b0 Merge branch 'fix_omp_detection' of github.com:rbberger/lammps into collected-small-fixes 2025-04-20 10:37:04 -04:00
4e69046e54 cmake: fix omp.h detection
CMAKE_REQUIRED_LINK_OPTIONS needs to be a ;-separated list.
See https://cmake.org/cmake/help/latest/module/CheckIncludeFileCXX.html.
Fixes OpenMP detection with AppleClang when libomp is manually provided.
2025-04-20 00:40:24 -06:00
c088ce2f51 fix typo 2025-04-19 11:05:52 -04:00
699e5bee07 Merge branch 'fix_cmake_list' of github.com:alinelena/lammps into collected-small-fixes 2025-04-19 11:02:45 -04:00
bd427ecf7a do not make CMAKE_CXX_FLAGS a list of springs, ends up adding ; to the flags breaking compilation 2025-04-19 08:57:54 +01:00
9a08f7b23b add test for indented output 2025-04-17 16:26:03 -04:00
6e2d7f48d7 alternate approach to include header from thirdparty dir 2025-04-17 14:10:03 -04:00
51aa87d4ce Merge remote-tracking branch 'github/develop' into collected-small-fixes 2025-04-17 13:58:14 -04:00
7ca493917a Merge pull request #4542 from akohlmey/add-json-lib
Integrate header-only JSON library
2025-04-17 13:56:16 -04:00
a7760e82e1 Merge pull request #4536 from akohlmey/remove-cmake-tune-flags
Remove CMAKE_TUNE_FLAGS
2025-04-17 11:02:04 -04:00
27d8e103eb move json.hpp class to thirdparty folder and add wrapper for use with LAMMPS 2025-04-16 15:54:59 -04:00
a9fe42bea4 fix bug reported in issue #4551 2025-04-16 06:21:11 -04:00
4553108035 add minimal unit test for JSON class 2025-04-15 22:11:44 -04:00
c4c76dd96c catch JSON library exceptions 2025-04-15 21:31:03 -04:00
b131659a43 modify include guard and namespace to avoid clashes with the original version 2025-04-15 21:31:03 -04:00
d2d7248e3a import original version 3.11.3 files 2025-04-15 21:31:03 -04:00
689b542da6 make minimize work with KOKKOS package without -suffix or suffix command 2025-04-14 10:59:54 -04:00
b081d289c1 Merge pull request #4546 from akohlmey/lammps-gui-enhancements
LAMMPS-GUI enhancements
2025-04-14 10:49:54 -04:00
0b0383bc64 Merge pull request #4548 from jrgissing/bond/react-create+rate_limit_bugfix
bond/react: refactor reaction counting
2025-04-14 09:38:10 -04:00
7be6e95647 Rephrasing suggested by @simongravelle 2025-04-14 06:28:29 -04:00
31df721767 update documentation 2025-04-13 20:01:06 -04:00
0bab80a26e not much use for editing x axis label. better give more space to other options 2025-04-13 19:33:07 -04:00
f181ca6aec support setting graph colors in preferences 2025-04-13 16:56:21 -04:00
1eb61936ab refactor reaction counting
previously, the rate_limit keyword did not work when also creating atoms
2025-04-13 12:56:01 -04:00
00673999af Merge remote-tracking branch 'github/develop' into lammps-gui-enhancements 2025-04-13 05:41:26 -04:00
994b7b4937 Merge pull request #4540 from evoyiatzis/fix-adapt-dihedral
extend fix adapt to treat dihedrals
2025-04-13 05:39:58 -04:00
bb09088731 add new tab to preferences for charts window settings 2025-04-12 11:49:41 -04:00
1ad2df84d8 add checkbox to automatically open tutorial website, if available 2025-04-12 06:49:44 -04:00
d0c3564216 update TODO list 2025-04-12 00:53:45 -04:00
2dd53c440e Add mini ToC for HowTo only and reorganize the introduction 2025-04-12 00:47:35 -04:00
ed1f4cc381 add functionality to edit the plot title and x- and y-axis labels 2025-04-11 23:25:56 -04:00
3aa3d45a9f Merge pull request #4532 from akohlmey/collected-small-fixes
Collected small fixes and changes
2025-04-11 21:02:02 -04:00
b8e14cd0c9 correct and rephrase one more time 2025-04-11 14:04:33 -04:00
3810be6c8b correct / clarify embedded docs 2025-04-11 14:04:27 -04:00
02c627db82 Merge branch 'collected-small-fixes' of github.com:akohlmey/lammps into collected-small-fixes 2025-04-11 12:34:45 -04:00
190ecd2666 clarify 2025-04-11 12:34:31 -04:00
a5b83224e4 rephrase to be less ambiguous and provide a couple more details 2025-04-11 12:29:03 -04:00
90797c7b62 document that also molecules from the molecule command can be visualized 2025-04-10 11:51:13 -04:00
83c785740b improve phrasing 2025-04-10 10:49:27 -04:00
dfc10e5b59 small improvements of molecule visualization. 2025-04-10 08:56:57 -04:00
bc031bdd7a initial attempt to allow viewing molecules. 2025-04-10 08:23:04 -04:00
f2bf0d0a8b add optional create_atoms group keyword to add new atoms to a custom group 2025-04-10 05:36:26 -04:00
980bf70310 improve error messages 2025-04-10 05:00:41 -04:00
227b4ed12d remove unused class members and plug memory leaks 2025-04-10 04:39:56 -04:00
32592e6660 add feature idea for LAMMPS-GUI 2025-04-10 01:13:44 -04:00
2f861b83d7 correct embedded documentation 2025-04-10 00:01:40 -04:00