Commit Graph

17025 Commits

Author SHA1 Message Date
13cf357f66 document in README, that msi2lmp is now build alongside LAMMPS 2019-04-07 00:47:10 -04:00
6f7b3643ef document clang/clang++ preset with settings for MPI and OpenMP 2019-04-07 00:46:43 -04:00
e57e4a730b more packages with default-to-download-if-lib-not-found 2019-04-07 00:45:57 -04:00
b40c4d1641 update version number and some reformatting of the LAMMPS manpage 2019-04-06 23:45:01 -04:00
1dd21e6e0c make downloaded LATTE library use the same BLAS/LAPACK as LAMMPS 2019-04-06 23:44:27 -04:00
a6c9a782a4 add manpage for msi2lmp 2019-04-06 23:41:48 -04:00
3b43fc3ea7 install msi2lmp force field files and set environment variable, so they can be found automatically 2019-04-06 20:41:00 -04:00
0d8d8dc0da Merge branch 'master' into collected-small-changes 2019-04-06 19:52:39 -04:00
ce1040a103 Merge pull request #1414 from oywg11/github-tutorial-update
fix two bugs in potential #839
2019-04-06 19:44:11 -04:00
b25657c67b trigger download by default if not found for LATTE package/library 2019-04-06 17:49:56 -04:00
494e76da7d add false positive 2019-04-06 17:29:04 -04:00
cb398bd026 silence some more compiler warnings 2019-04-06 17:23:37 -04:00
72b69783de add download-default-if-not-found logic to voro++ library for VORONOI package 2019-04-06 17:17:17 -04:00
8c02ce7302 silence some compiler warnings 2019-04-06 17:03:40 -04:00
f98aed419c document the 'maxelt' define in pair style meam/c and how to change it 2019-04-06 17:03:24 -04:00
86f4080b71 some dead code removal in pair style kim. 2019-04-06 16:48:29 -04:00
59a4d42231 make default CMake setting for DOWNLOAD_KIM depend on whether the KIM API is found or not 2019-04-06 16:47:48 -04:00
e8289b0024 Merge branch 'find-kim-fix' of https://github.com/ellio167/lammps into collected-small-changes 2019-04-06 16:28:48 -04:00
3070a11041 guard against extracting too many elements from the MEAM library into the statically sized arrays
this will abort with a meaningful error message and people can fix up their LAMMPS binary as needed.
2019-04-06 16:23:10 -04:00
47b7437976 Have FindKIM-API.cmake work in QUIET mode 2019-04-06 15:08:15 -05:00
6643a4ec92 Fixup FindKIM-API.cmake and clean up some v2 remnants 2019-04-06 14:20:21 -05:00
cb27d03c79 stop with error message when computing per-atom stress for reax/c/omp 2019-04-06 11:27:04 -04:00
8683e1ebf8 revert ineffective changes 2019-04-06 11:24:59 -04:00
d6a12f6c3e roll back ineffective changes and add zeroing of allocated storage 2019-04-06 11:22:22 -04:00
efa8c8d58b sanitize file pointer access handling 2019-04-06 11:21:43 -04:00
bcb6e1be4f disable fdotr for virial also for regular pair style reax/c 2019-04-06 09:45:19 -04:00
bca7364ba3 disallow using fdotr for computing virial contributions with reax/c/omp 2019-04-06 09:21:50 -04:00
9334c72c04 clang can be installed supporting OpenMP without having omp.h installed: add check 2019-04-06 08:59:06 -04:00
e629733d0b change error-all to error-one 2019-04-06 10:26:56 +03:00
f10534a721 add code to build msi2lmp with CMake 2019-04-05 23:56:23 -04:00
de0938da39 avoid segfault when catching command line flag errors with EXCEPTIONS enabled 2019-04-05 23:24:43 -04:00
3d7a4fb945 silence compiler warnings, remove dead code 2019-04-05 17:04:07 -04:00
d17553d8d2 add preset to make it easier to use clang with OpenMP and MPI 2019-04-05 16:52:28 -04:00
e56d69a267 silence compiler warnings 2019-04-05 16:52:03 -04:00
67f8c83661 Merge pull request #1415 from stanmoore1/kk_nh
Fix bug in fix_nh_kokkos
2019-04-05 16:50:08 -04:00
542d8aaf07 Fix bug in fix_nh_kokkos 2019-04-05 14:16:25 -06:00
6e6d350572 correct the spelling 2019-04-05 23:01:28 +03:00
4f459a59a1 correct the spelling 2019-04-05 22:55:40 +03:00
ac7312caf1 Merge pull request #1409 from akohlmey/collected-small-changes
Collected small changes and bugfixes for the next patch release
2019-04-05 15:39:16 -04:00
ed90596849 Merge pull request #1399 from rtoijala/fix-elstop
Add fix electron/stopping to USER-MISC
2019-04-05 15:34:41 -04:00
7f040a3676 Merge pull request #1404 from akohlmey/compute-local-bugfix
Fix bug reported in Issue #1401
2019-04-05 15:34:10 -04:00
815ad4dab2 fix a bug in ILP 2019-04-05 22:04:45 +03:00
05993a79b8 Merge branch 'pair_kim_fix' of https://github.com/ellio167/lammps into collected-small-changes 2019-04-05 11:39:19 -04:00
175f3ee648 Fix pointer assignment in pair_kim
Bug only affects cases where neighbor list needs to be stripped.
Thanks to Mingjian Wen (@mjwen) for finding and reporting this.
2019-04-05 10:14:45 -05:00
2e1da2958d resolve toctree and paper anchor issues 2019-04-05 11:04:11 -04:00
2757e4e6e6 two more false positives 2019-04-05 10:53:41 -04:00
85a0461a48 reword and reformat text in Howto_bioFF.txt a little bit. add warnings about msi2lmp's age and lack of maintenance 2019-04-05 10:53:23 -04:00
20cbe1edff Merge branch 'patch-1' of https://github.com/evoyiatzis/lammps into collected-small-changes 2019-04-05 10:36:53 -04:00
5d3801cb12 Include info for COMPASS in the Howto section 2019-04-05 15:50:58 +02:00
383e206cc2 the GCC folks did it again. :-( 2019-04-05 08:00:04 -04:00