Commit Graph

26543 Commits

Author SHA1 Message Date
14cb45c161 xcode compiler may be reported as AppleClang instead of Clang 2021-05-22 10:40:55 -04:00
5e2b97812e update sed command for BSD sed which doesn't like multiple -e options 2021-05-22 10:33:06 -04:00
450503cc42 pass C++ standard setting flag to N2P2 make (needed for macOS' xcode) 2021-05-22 10:30:38 -04:00
3083756a64 include USER-HDNNP in MinGW64 cross-compilation build 2021-05-22 08:03:29 -04:00
01a94af217 small doc update / whitespace fix 2021-05-22 08:01:45 -04:00
95427b1fda add support for building with Windows including cross-compilation and MPI-2 2021-05-22 07:43:54 -04:00
c0b25853cf more cmake tweaks 2021-05-21 17:12:11 -04:00
9f363f219f silence compiler warning 2021-05-21 16:58:01 -04:00
db55531eed simplify 2021-05-21 16:57:44 -04:00
1c4e011926 plug memory leak 2021-05-21 16:57:35 -04:00
48169abbe8 add doi to short citation message 2021-05-21 16:57:24 -04:00
a9dfecc27f regularize automatic download build for n2p2 library with CMake 2021-05-21 16:16:01 -04:00
10961b8cb6 update to upstream 2021-05-21 16:15:31 -04:00
e01502d349 Finished build doc pages 2021-05-21 18:18:46 +02:00
a0ca2e2681 Updated pair style hdnnp docs 2021-05-19 00:15:25 +02:00
9cf8f96838 Fixed bug, changed build docs 2021-05-17 00:39:06 +02:00
31a55f1f76 Merge branch 'master' of github.com:lammps/lammps into pair-style-nnp 2021-05-16 22:54:29 +02:00
e6178892c7 Merge pull request #2766 from akohlmey/next_patch_release
Step version strings for the next patch release
patch_14May2021
2021-05-15 01:13:41 -04:00
7d40eb3cac fix issue with commands docs not being kept separate from programmer guide 2021-05-15 00:26:19 -04:00
492d82904f add false positives 2021-05-14 23:51:43 -04:00
59cc481108 change config entry for post 3.5 sphinx versions and enable permalinks 2021-05-14 23:51:33 -04:00
9f4cca4981 correct index entries 2021-05-14 23:50:51 -04:00
c311574fe6 add missing fix entry 2021-05-14 23:50:38 -04:00
20de21f8de Merge branch 'master' into next_patch_release 2021-05-14 23:39:25 -04:00
235e91a337 Merge pull request #2762 from akohlmey/prepare-clang-format
Prepare LAMMPS to support updating the coding style with clang-format
2021-05-14 23:23:35 -04:00
1ed75e3db0 fix buffer overflow in writing triclinic headers with MPI-I/O 2021-05-14 22:51:56 -04:00
6b80cb0169 whitespace 2021-05-14 20:47:08 -04:00
07cb55ef7f Merge branch 'master' into prepare-clang-format 2021-05-14 20:43:51 -04:00
247edbcaa3 Merge pull request #2722 from lammps/kokkos_double_free
Avoid double free in some Kokkos pair styles destruction
2021-05-14 20:43:00 -04:00
d24d501a4a Merge branch 'master' into prepare-clang-format 2021-05-14 20:38:54 -04:00
b23556e1a8 Merge pull request #2765 from masterleinad/fix_snap_kokkos_sycl
Fix compiling the SNAP module with Kokkos and SYCL
2021-05-14 20:31:53 -04:00
06f0a9207e Merge pull request #2769 from lammps/neigh-copy-bug
fix bug with mis-indexing of neighbor build copyflag check
2021-05-14 19:16:56 -04:00
7fcd449864 apply clang-format to all headers with some exceptions 2021-05-14 19:16:07 -04:00
250fbd24a3 neighbor build check on copyflag mis-indexed 2021-05-14 16:06:56 -06:00
60e41a90c2 update new files for clang-format 2021-05-14 17:37:58 -04:00
7284a70900 Merge branch 'master' into prepare-clang-format 2021-05-14 17:25:24 -04:00
de025aec47 Merge pull request #2761 from rbberger/collected-small-changes
Collected small changes and fixes for the next patch release
2021-05-14 17:24:36 -04:00
79ebf387fe Merge branch 'prepare-clang-format' of github.com:akohlmey/lammps into prepare-clang-format 2021-05-14 17:22:03 -04:00
9483db9581 Merge branch 'prepare-clang-format' of github.com:akohlmey/lammps into prepare-clang-format 2021-05-14 17:21:18 -04:00
7d44da08ad Merge branch 'prepare-clang-format' of github.com:akohlmey/lammps into prepare-clang-format 2021-05-14 15:25:05 -04:00
aa6c6169a8 Merge branch 'master' into prepare-clang-format
# Conflicts:
#	src/KOKKOS/nbin_kokkos.h
#	src/KOKKOS/nbin_ssa_kokkos.h
#	src/MOLECULE/bond_fene_expand.h
#	src/USER-DPD/nbin_ssa.h
#	src/USER-DPD/nstencil_half_bin_2d_ssa.h
#	src/USER-DPD/nstencil_half_bin_3d_ssa.h
#	src/USER-INTEL/nbin_intel.h
#	src/USER-MISC/fix_propel_self.cpp
#	src/USER-OMP/npair_full_multi_old_omp.h
#	src/USER-OMP/npair_half_multi_old_newton_omp.h
#	src/USER-OMP/npair_half_size_multi_newtoff_omp.h
#	src/USER-OMP/npair_halffull_newtoff_omp.h
#	src/USER-OMP/npair_halffull_newton_omp.h
#	src/USER-OMP/npair_skip_omp.h
#	src/main.cpp
#	src/nbin_standard.h
#	src/npair_full_multi_old.h
#	src/npair_halffull_newtoff.h
#	src/npair_halffull_newton.h
#	src/npair_skip.h
#	src/npair_skip_respa.h
#	src/npair_skip_size.h
#	src/npair_skip_size_off2on.h
#	src/npair_skip_size_off2on_oneside.h
#	src/nstencil_full_bin_2d.h
#	src/nstencil_full_bin_3d.h
#	src/nstencil_full_ghost_bin_2d.h
#	src/nstencil_full_ghost_bin_3d.h
#	src/nstencil_full_multi_2d.h
#	src/nstencil_full_multi_3d.h
#	src/nstencil_full_multi_old_2d.h
#	src/nstencil_full_multi_old_3d.h
#	src/nstencil_half_bin_2d_newtoff.cpp
#	src/nstencil_half_bin_3d_newtoff.cpp
#	src/nstencil_half_bin_3d_newton_tri.h
#	src/nstencil_half_ghost_bin_2d_newtoff.cpp
#	src/nstencil_half_ghost_bin_2d_newtoff.h
#	src/nstencil_half_ghost_bin_3d_newtoff.cpp
#	src/nstencil_half_ghost_bin_3d_newtoff.h
#	src/nstencil_half_multi_2d.h
#	src/nstencil_half_multi_2d_newtoff.h
#	src/nstencil_half_multi_2d_newton_tri.h
#	src/nstencil_half_multi_2d_tri.h
#	src/nstencil_half_multi_3d_newtoff.h
#	src/nstencil_half_multi_3d_newton_tri.h
2021-05-14 15:24:02 -04:00
117b6e2a80 Add copymode flag 2021-05-14 12:43:02 -06:00
a93ec125a4 Move deep_copy call 2021-05-14 12:24:21 -06:00
6740959c65 Merge pull request #2611 from MolSSI-MDI/mdi
Add MolSSI Driver Interface Support
2021-05-14 13:18:52 -04:00
6f6adc285a Fix typo 2021-05-14 10:25:32 -06:00
5a7e784447 Add missing copymode to parent classes 2021-05-14 10:08:05 -06:00
eedd726edb Merge branch 'master' of github.com:lammps/lammps into kokkos_double_free 2021-05-14 09:38:21 -06:00
7b4fdb92df Use only copymode in Kokkos pair_styles 2021-05-14 09:36:13 -06:00
70ce971d4a address some warnings from coverity scan 2021-05-14 08:39:47 -04:00
ad34953a52 Merge branch 'master' into collected-small-changes 2021-05-14 08:35:49 -04:00