Commit Graph

36136 Commits

Author SHA1 Message Date
162f243ebc Merge pull request #3797 from Compizfox/develop
Include bond forces in `compute stress/cartesian`
2023-06-14 21:31:41 -04:00
618fa815cc Merge pull request #3812 from wmbrownIntel/intel_fixes_2023Jun
Misc Fixes for Intel Package
2023-06-14 18:21:34 -04:00
634c6cdc13 Merge pull request #3632 from arghdos/eam_teampolicy_optimization
Implement a "caching in LDS" approach for EAM to improve performance in HIP
2023-06-14 15:38:54 -04:00
27908139ae whitespace 2023-06-14 14:14:47 -04:00
0cd566a417 Fix compile error for HIP 2023-06-14 10:43:30 -06:00
80f3b6699e Merge pull request #3817 from jrgissing/bond/react-charge_rescale+other_small_fixes
Bond/react: rescale_charges fix
2023-06-14 12:29:07 -04:00
fcd234f723 Merge branch 'develop' of github.com:lammps/lammps into eam_teampolicy_optimization 2023-06-14 09:28:44 -06:00
e27895b232 Merge pull request #3816 from ndtrung81/body_bugfix
Bugfix for body rounded polyhedron and polygon pair styles for non-lj units
2023-06-14 11:28:13 -04:00
96b8bbbdc9 Merge branch 'develop' into develop 2023-06-14 15:09:51 +02:00
e6cd79e0e9 Fix doc links 2023-06-14 15:04:46 +02:00
8aeb059ce8 Update doc/src/compute_stress_cartesian.rst
Co-authored-by: Axel Kohlmeyer <akohlmey@gmail.com>
2023-06-14 15:03:35 +02:00
e831e54a21 Merge pull request #3811 from rbberger/python_and_library_fixes
PyLammps and Library interface changes
2023-06-14 08:25:32 -04:00
03b25dcbaa update error checks 2023-06-13 21:25:58 -04:00
14a27e98c9 fix for when deleting atoms 2023-06-13 21:09:29 -04:00
105ef5f103 Rescaled EPSILON with a length scale (rounded radii) for contact detection 2023-06-13 14:24:12 -05:00
64508e08aa pylammps: use library API to return available groups 2023-06-12 22:49:40 -06:00
d7ecf41ff6 pylammps: use library API for variable access 2023-06-12 22:49:40 -06:00
2f7c3bf959 pylammps: reduce dependency to info command output 2023-06-12 22:49:34 -06:00
53f90fff3d final touch 2023-06-12 21:28:51 -04:00
603e397919 get_totalcharge routine 2023-06-12 20:20:45 -04:00
2ba83a4d8f add versionadded keyword 2023-06-12 15:31:37 -04:00
82cea7a546 small doc updates for added pppm_table keyword 2023-06-12 15:31:03 -04:00
90416faf0a Merge branch 'develop' into intel_fixes_2023Jun 2023-06-12 15:18:08 -04:00
bc87c69d60 Merge branch 'python_and_library_fixes' of github.com:rbberger/lammps into python_and_library_fixes 2023-06-11 17:48:26 -06:00
68a73f1c33 library: return atom and force styles via extract_global 2023-06-11 17:46:58 -06:00
c214f654b6 update communicated rxn instances to doubles 2023-06-11 19:27:58 -04:00
23552d4b7a refactor to carry around extra per-reaction values 2023-06-11 17:59:16 -04:00
92e069b19d add fortran unit tests for lammps_last_thermo 2023-06-10 21:36:56 -04:00
62b388b48f consolidate LAMMPS data type constants and enums and use the same names 2023-06-10 19:23:11 -04:00
0dab1910db Small updates to benchmark script in INTEL/TEST 2023-06-10 13:34:16 -07:00
da9637e94c Adding std namespace specifier to transcendentals in intel pkg 2023-06-10 13:33:10 -07:00
acaa2b7f9b pylammps: update email 2023-06-10 11:35:36 -06:00
0e7d91b611 add missing documentation 2023-06-10 07:45:52 -06:00
235e98ee6a pylammps: only capture all thermo if PYTHON package is enabled 2023-06-09 17:40:06 -06:00
fe45b766c3 pylammps: make use of lammps_last_thermo
this now avoids parsing LAMMPS output to extract thermo data, but instead uses
the new lammps_last_thermo library function
2023-06-09 17:40:06 -06:00
ecf7c24e87 Avoid static int in lammps_last_thermo 2023-06-09 17:40:06 -06:00
f6b0981474 Fixing some issues introduced into verlet_lrt_intel.cpp 2023-06-09 14:05:41 -07:00
2cb87bc9a2 Intel package should not reset atom sort frequency if it is 0 (disabled). 2023-06-08 21:47:30 -07:00
54286ce4dd Merge pull request #3781 from akohlmey/collected-small-fixes
Collected small changes and fixes
2023-06-08 22:03:23 -04:00
cbf062f383 Merge pull request #3809 from jtclemm/sdpd-examples
Updating SDPD examples
2023-06-08 20:06:35 -04:00
4cad18a057 document Fortran version of lammps_last_thermo 2023-06-08 19:59:47 -04:00
ce38bb988d add lammps_last_thermo support to swig, plugin and fortran interface 2023-06-08 19:12:59 -04:00
2e1190bfee Fixing issue with when atom styles using torque are mixed with intel pair styles not using torque. Generating runtime error for mixing intel gayberne style with non-ellipsoid intel pair styles. 2023-06-08 15:02:17 -07:00
5d4f9abf5b add unit tests for c-library interface and plain python module 2023-06-08 15:15:28 -04:00
81854cd03e change type keyword to return a pointer to static location for better portability 2023-06-08 14:55:45 -04:00
b093f1aac1 move versionadded tags to the top, replace some missed TBD with version info 2023-06-08 13:11:19 -04:00
3f6032e80d add python module interface to lammps_last_thermo, small consistency fixes 2023-06-08 13:05:37 -04:00
8ddac8cf02 search through the python folders recursive to detect all pending version tags 2023-06-08 12:46:41 -04:00
a2c968386e include versionadded tag 2023-06-08 12:46:00 -04:00
36cac1e83d make sure the field_data vector size always matches the size of the keywords vector 2023-06-08 12:45:41 -04:00