Commit Graph

21935 Commits

Author SHA1 Message Date
1a738f80e2 Update false_positives.txt 2020-07-15 20:14:17 +02:00
41a7557cc9 first attempt of a documentation file 2020-07-15 18:53:04 +02:00
a88237df99 source code for fix widom 2020-07-14 13:17:20 +02:00
284b1618f9 Merge pull request #2227 from akohlmey/collected-small-fixes
Collected small updates and bugfixes
2020-07-11 18:30:27 -04:00
83291fdd67 may not use pair_style kim before box is defined
NOTE: this will not happen when the kim_init and kim_interactions commands are used.
2020-07-11 18:07:25 -04:00
f969d9ab72 add space for terminating NULL byte in MPIIO dump styles.
closes #2225
2020-07-11 13:19:08 -04:00
f307d7f5f9 count total number of styles including aliases, suffixes, and undocumented 2020-07-11 13:18:44 -04:00
cd0b034cab adjust regex for removed styles to correctly handle command styles 2020-07-11 13:18:33 -04:00
b3060bc48e add suppressions for googletest 2020-07-11 13:18:14 -04:00
e42342ff51 zero out additionally allocated struct Param storage 2020-07-11 13:18:04 -04:00
8359a4384a more OpenMPI suppressions 2020-07-11 13:17:51 -04:00
c6dc8b5414 fix initialition issue 2020-07-11 13:17:39 -04:00
9fe0b1cb5e ewald_order needs to be saved in restart 2020-07-11 13:17:24 -04:00
4778887243 fix memory leak in pair style sw/intel for good 2020-07-11 13:17:10 -04:00
510d5277c1 fix typo 2020-07-11 13:16:58 -04:00
b49f0a6a09 avoid memory leak in pair style sw/intel 2020-07-11 13:16:36 -04:00
4b2c1f5edd some more OpenMPI suppressions 2020-07-11 13:16:25 -04:00
d4da99562f use fmtlib for writing data file coefficients. use mixed coefficients for PairIJCoeffs 2020-07-11 13:16:01 -04:00
26e21852ff several fixes to address issues detected by valgrind
- make sure g_ewald_6 is not accessed uninitialized
- fix memory leak
- do not override g_ewald_6 if it is explicitly set
2020-07-11 13:15:37 -04:00
8eb7791342 avoid googletest stalling on exit tests when using OpenMPI 2020-07-11 13:15:16 -04:00
207232c1a3 avoid illegal free() 2020-07-11 13:12:50 -04:00
ed452c3624 synchronize exception based and non-exception based code paths 2020-07-11 13:12:34 -04:00
e6a8f3c8c0 use parenthesis to correct precedence 2020-07-11 13:10:37 -04:00
17d59a4342 small tweak 2020-07-11 13:06:58 -04:00
6f775f6592 fix typo 2020-07-11 13:06:43 -04:00
d0c544224f avoid exception when having a command fail due to an empty string 2020-07-11 13:06:31 -04:00
40e59b27a7 add prototypes for exception handling functions 2020-07-11 13:06:05 -04:00
f8321d77d8 add missing symlink 2020-07-11 13:05:41 -04:00
d32000239b refactor tester 2020-07-11 13:05:03 -04:00
e2e4305fe9 Merge pull request #2226 from akohlmey/ubuntu-stable
Update documentation to recommend lammps-stable packages for Ubuntu
2020-07-11 13:02:00 -04:00
8396ade280 update information about the ubuntu binaries to recommend the new stable packages 2020-07-10 22:50:47 -04:00
61e3b41908 Merge pull request #2220 from lammps/doc-radians
clarify units for energy terms with angles
2020-07-07 20:13:56 -04:00
6239a579e8 clarify units for energy terms with angles 2020-07-07 15:19:17 -06:00
6bf329098e Merge pull request #2216 from ndtrung81/tersoff-gpu
Cleanup and bugfixes for some 3-body pair styles in the GPU package
2020-07-06 13:35:12 -04:00
9e96b71703 Merge pull request #2214 from akohlmey/kspace-tests
Add unit tests for some kspace styles and more pair styles
2020-07-06 12:48:09 -04:00
2977a8aa15 Merge pull request #2211 from athomps/compute-mliap
Add compute style mliap to MLIAP package
2020-07-06 12:47:41 -04:00
d1b5b0a168 Merge pull request #2210 from ohenrich/user-cgdna
Update of example input and log files
2020-07-06 12:47:09 -04:00
d768069cfe Merge pull request #2205 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2020-07-06 12:46:16 -04:00
5d0800beef Merge pull request #2204 from rbberger/doc-changes
Documentation Changes: split pair_lj.rst
2020-07-06 12:19:06 -04:00
9ec72d1406 add tests for unknown commands, quit, and reset_timestep 2020-07-06 10:26:04 -04:00
f1abfe2411 avoid segfault when calling the log command without arguments 2020-07-06 10:25:37 -04:00
461633e6f6 add unit tests for the suffix, thermo, and timestep commands 2020-07-06 00:11:13 -04:00
83d58ba57d we may not use "suffix on" before a suffix is defined. switching back to a non-hybrid suffix must set suffix2 to NULL 2020-07-06 00:10:43 -04:00
1df59c4b95 change lammps2pdb.pl to only ignore the first line of a data file. whitespace fixes 2020-07-05 23:36:00 -04:00
fe12ea2734 simplify compute creation 2020-07-05 22:46:48 -04:00
134a2e8dd6 use fmtlib and utils::logmesg() in fix msst 2020-07-05 22:37:59 -04:00
759797733d Generalized the variable and function names 2020-07-05 18:58:32 -06:00
a0157f8063 use fmtlib consistently when writing data files 2020-07-05 17:16:58 -04:00
443cc4445e have compute property/atom output shape parameters as diameters not radii consistent with the manual 2020-07-05 16:44:44 -04:00
e2a07acb71 add test for units command 2020-07-05 13:20:23 -04:00