Commit Graph

19783 Commits

Author SHA1 Message Date
1c8b7022a3 update documentation for the conventional build 2020-02-20 17:33:57 +01:00
0db0d5408a update instructions for in qmmm README to cover both build systems and include more details 2020-02-20 16:59:06 +01:00
febb381880 updates and corrections to building LAMMPS as a library and using the USER-QMMM package 2020-02-20 14:58:02 +01:00
5a8eaed13b Update handling of USER-QMMM package in CMake scripts. minor cosmetic changes 2020-02-20 14:39:53 +01:00
dcd9b7c891 replace two tables with code-block sections 2020-02-20 02:12:32 -05:00
a5ab3b13c5 cleaner typesetting 2020-02-19 16:15:35 -05:00
75a43398d9 replace more "parsed-literal" with "code-block" in build docs 2020-02-19 16:11:42 -05:00
a9dc629489 replace non-printable ASCII characters 2020-02-19 15:34:58 -05:00
aa5b870f7e use "code-block" instead of "parsed-literal" 2020-02-19 15:32:58 -05:00
91ad19754c correct, expand, and clarify documentation for linking with LAMMPS as a library 2020-02-19 18:14:57 +01:00
94d1aa45bb add "make mode=print <machine>" to print out compiler and linker flags and libs for any available makefile 2020-02-19 18:11:34 +01:00
8a52e5dbe7 fix logic error in generic Install.py script when a Makefile.lammps is missing 2020-02-19 18:10:32 +01:00
7434267f57 Merge pull request #1886 from mariellaippolito/master
Updates to qmmm package
2020-02-18 11:00:39 -05:00
be847dc12d Merge pull request #1885 from akohlmey/remove-cpp11-check
Remove C++11 check for stable release
2020-02-18 10:59:56 -05:00
012dce93a0 Update package build docs for building the USER-QMMM package 2020-02-18 15:12:31 +01:00
cc3a7c37cb more lib compilation updates 2020-02-18 11:16:08 +01:00
36458a95b7 Updated 2020-02-18 10:59:51 +01:00
387a283157 more lib compilation updates 2020-02-18 10:55:13 +01:00
82b57bd3b8 Upfated Makefile.foo inside lib/qmmm 2020-02-18 10:47:04 +01:00
960553db58 remove C++11 check for stable release 2020-02-17 15:09:24 -05:00
ad125bf36a Merge pull request #1881 from akohlmey/next_lammps_version
Update version string for next patch release
patch_18Feb2020
2020-02-17 14:53:17 -05:00
fe6f6b3002 Merge pull request #1869 from akohlmey/doc-continued-refactoring
More documentation refactoring for embedding math expressions
2020-02-17 13:06:07 -05:00
f9bee338dd Merge pull request #1875 from akohlmey/collected-small-fixes
Collected small bug fixes and updates
2020-02-17 11:40:27 -05:00
f69c6196a0 Merge branch 'master' into doc-continued-refactoring
# Conflicts:
#	doc/src/compute_fep.rst
2020-02-17 17:37:10 +01:00
c8561ecef0 Merge pull request #1879 from akohlmey/user-plumed-update
Update USER-PLUMED to include support for version 2.6.0. Fix bug in API check
2020-02-17 11:32:10 -05:00
d01b0ed543 Merge pull request #1882 from agiliopadua/docs
Convert documentation of compute_fep, pair_fep_soft, pair_nm to mathjax
2020-02-17 11:31:43 -05:00
b30670d405 correct some grammar and style issues in describing using/building LAMMPS on windows 2020-02-17 10:27:57 +01:00
4a2f05d333 convert pair styles srp to tersoff 2020-02-16 13:42:37 -05:00
3f5bb96aed pair ufm to pair zbl 2020-02-15 16:47:32 -05:00
a508138510 convert wall fixes to embedded math 2020-02-15 12:13:32 -05:00
b25f781071 convert docs for more fixes 2020-02-15 11:35:21 -05:00
0e2604fc80 Convert documentation of compute_fep and pair_fep_soft to mathjax 2020-02-15 16:19:39 +01:00
fd8cd6faa5 typeset hyperdynamics fix docs with embedded math 2020-02-15 06:50:04 -05:00
b0de48e47f convert some more fixes 2020-02-15 02:31:50 -05:00
f4b64e8d91 fix typo in comment 2020-02-14 18:29:11 -05:00
07c5adc57a we need more specific matches to correctly handle TIME and TIMESTEP items 2020-02-14 16:07:34 -05:00
381ac888c8 initialize cut_respa to NULL in constructor to avoid uninitialized access 2020-02-14 15:51:38 -05:00
9bff431553 make sure coulomb tables are initialized in all coul/long GPU pair styles 2020-02-14 15:50:49 -05:00
0b57549f4c must generate coulomb tables with pair style lj/class2/coul/long/gpu 2020-02-14 15:34:12 -05:00
c23f164639 Increase portability to more C++ compilers 2020-02-14 13:40:31 -05:00
2de515c671 improve layout 2020-02-14 12:31:55 +01:00
74a2fd973b convert docs for fixes eos/cv, eos/table/rx, gcmc, grem, langevin/spin, lb/fluid 2020-02-14 12:27:55 +01:00
c47245c629 update/correct lammps executable manpage 2020-02-14 10:33:08 +01:00
d7a7c103ca Update version string for next patch release 2020-02-14 09:55:56 +01:00
7b32b1e595 Update pair_body_rounded_polyhedron docs 2020-02-14 09:52:06 +01:00
b1493d651f Update pair_body_rounded_polygon docs 2020-02-14 09:44:03 +01:00
f70e39c366 update fix ave/correlate/long docs to include info about limitations in output options vs. ave/correlate 2020-02-14 09:30:06 +01:00
147d430a6d Update pair_body_nparticle docs 2020-02-14 09:27:55 +01:00
e339e1735d Update pair_beck docs 2020-02-14 09:19:32 +01:00
076c28538c Merge branch 'read_dump_item_time' of https://github.com/mkanski/lammps into collected-small-fixes 2020-02-13 13:13:24 -05:00