Commit Graph

32482 Commits

Author SHA1 Message Date
1dc3c8fc26 remove hippynn examples 2022-09-26 19:56:00 -04:00
7b7237bdaf try to suppress creating __pycache__ folders in the python source dirs 2022-09-24 22:27:22 -04:00
19a0747aeb add unit test for MLIAP unified 2022-09-24 22:15:29 -04:00
ebf69f2e79 avoid incorrect results with ghostneigh_flag on by skipping contributions from non-local i atoms 2022-09-24 21:09:27 -04:00
0ed0d757ec refactor unified LJ example input to embed the python code into the input 2022-09-24 21:08:43 -04:00
59ca352e48 whitespace 2022-09-24 15:34:41 -04:00
a02ab6eaa1 avoid memory corruption when using mliap unified with ghostneigh_flag == 1 2022-09-24 15:32:25 -04:00
ef8090fdd1 flag *unified* keyword as newly added in the next patch release 2022-09-24 15:31:47 -04:00
bab115e993 apply C++11 virtual/override conventions 2022-09-24 14:48:31 -04:00
1885f7e42d delete redundant memory deallocation 2022-09-24 14:48:13 -04:00
1ad782c050 initialize and (conditionally) free cutghost pointer in base class 2022-09-24 14:47:41 -04:00
e469c98e9d apply clang-format 2022-09-24 04:39:02 -04:00
a31977ca4c fix typo 2022-09-24 04:24:43 -04:00
46820a90c5 modernize and improve error message handling 2022-09-24 04:12:54 -04:00
5ddb0aeb16 cosmetic changes 2022-09-24 03:44:19 -04:00
f1756eeeee update unified LJ Ar example to include creating the pickle in the input 2022-09-24 03:33:19 -04:00
c7b24cb1e3 always accept "mliappy" and "unified" keywords, but print suitable error if not supported 2022-09-24 03:32:35 -04:00
c581fca39a Merge branch 'develop' into mliappy_unified 2022-09-24 03:07:31 -04:00
49a3be17cb c-library functions should be always present, documented, and lowercase 2022-09-24 03:07:24 -04:00
8ad478697e Remove trailing whitespace 2022-09-23 17:20:27 -06:00
a3326841ad Add MLIAP NumPy Ta06A example 2022-09-23 17:01:59 -06:00
597540dfb4 Merge branch 'mliappy_unified' of github.com:Boogie3D/lammps into mliappy_unified 2022-09-23 16:51:29 -06:00
5aad045686 Improve incompatible python interpreter warning 2022-09-23 16:51:20 -06:00
9eee1bbb5f Fix MLIAP Unified LJ example logs 2022-09-23 16:04:15 -06:00
43aabc7985 Update comments and documentation 2022-09-22 18:29:45 -06:00
e230a3bb5b Merge pull request #3450 from akohlmey/collected-small-changes
Collected small changes and fixes
2022-09-22 17:24:08 -04:00
3c5e446165 avoid null pointer dereference 2022-09-22 13:21:54 -04:00
24fd02725c make operator precedence explicit 2022-09-22 13:21:33 -04:00
96f04237c1 fix memory leak and avoid uninitialized data access 2022-09-22 13:16:38 -04:00
4f0caca9d8 make sure data is initialized 2022-09-22 13:05:32 -04:00
659ac90537 Merge branch 'develop' into collected-small-changes 2022-09-22 12:25:30 -04:00
422042bf66 Merge pull request #3455 from lammps/fix-pair-min-tweak
Adjust fix pair to work better with minimization
2022-09-22 12:25:04 -04:00
4a072d10db make sure array is initialized 2022-09-22 12:24:09 -04:00
e3729e51e8 remove unused method, modernize errors and access to molecule class, reformat 2022-09-22 12:23:52 -04:00
6fac8f1688 remove unused NeighRequest member variable index 2022-09-22 11:32:14 -04:00
6c9c61e763 remove debug output 2022-09-22 10:45:53 -04:00
2b27fd8acb address possible initialization issues reported by coverity scan 2022-09-22 10:34:23 -04:00
4f0cdcbe37 Merge branch 'develop' into collected-small-changes 2022-09-22 10:25:20 -04:00
b4bc780c76 Merge branch 'lammps:develop' into mliappy_unified 2022-09-22 02:14:54 -06:00
13b34a9d69 Merge pull request #3448 from jtclemm/BPM
Updates to BPM package
2022-09-21 20:02:40 -04:00
90212a6c35 Merge branch 'BPM' of github.com:jtclemm/lammps into BPM 2022-09-21 15:28:35 -06:00
fc969bc99b Adding parentheses to logic statement in fix update/special/bonds 2022-09-21 15:28:23 -06:00
39763444c5 add lasttime check to fix pair 2022-09-21 14:03:04 -06:00
0343ad09ea additional formatting updates 2022-09-21 15:58:12 -04:00
ad76bb2997 Merge branch 'patch-2' into collected-small-changes 2022-09-21 15:52:29 -04:00
51b323fc76 Fixing typo in pair_gayberne.rst
Fixing typo in the documentation
2022-09-21 20:01:38 +02:00
7c2013d862 silence compiler warnings 2022-09-21 10:01:53 -04:00
83b36f7e4b fix some minor documentation issues 2022-09-21 09:41:55 -04:00
72fab8d5f5 must depend on libflammps so that there is no race condition 2022-09-18 16:35:28 -04:00
8d6629cb80 update MDI library to version 1.4.12 which plugs memory leaks on initialization 2022-09-18 11:04:57 -04:00