Commit Graph

24967 Commits

Author SHA1 Message Date
4404469f5c run GitHub actions only on merges/pushes to master to save minutes 2021-02-02 11:38:24 -05:00
85539765d0 update docs about thermo_modify flush 2021-02-02 11:37:08 -05:00
c2c8c5e493 Merge remote-tracking branch 'github/master' into arg-info-class
# Conflicts:
#	src/compute_chunk_atom.cpp
#	src/compute_chunk_spread_atom.cpp
#	src/compute_reduce.cpp
#	src/compute_reduce_region.cpp
#	src/compute_slice.cpp
#	src/fix_ave_atom.cpp
2021-02-02 11:33:01 -05:00
4d98d9f6aa add arginfo to fix saed/vtk 2021-02-02 11:29:08 -05:00
f2479e7d05 Merge pull request #2401 from lammps/configure-github-actions
Enable CodeQL static analysis and integration and unit tests on MacOS via GitHub actions
2021-02-02 10:27:25 -05:00
bfe64629fd switch to do CodeQL analysis and Unittest on MacOS. currently for PRs and master 2021-02-01 20:32:24 -05:00
6d836d8f30 run documentation actions in parallel 2021-02-01 20:32:24 -05:00
a83fe46860 spelling target needs conf.py 2021-02-01 20:32:19 -05:00
88e182da64 speed up compilation for static code analysis by switching to debug build type and turning off optimization 2021-02-01 20:31:37 -05:00
b15555724d combine analysis and simplify 2021-02-01 20:31:37 -05:00
0be1a419c7 split codeql workflow into two files as no compilation is needed for python 2021-02-01 20:31:37 -05:00
60a11b9ea1 do parallel compilation 2021-02-01 20:31:36 -05:00
c11bd658fc Add documentation and style check workflow 2021-02-01 20:31:36 -05:00
9ca0653c3e add CodeQL static code analysis workflow 2021-02-01 20:31:36 -05:00
1a7cb4647f Merge pull request #2569 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2021-02-01 20:18:48 -05:00
2ee701f719 also flush screen stdio buffer with thermo_modify flush yes 2021-02-01 18:43:42 -05:00
2b44d67128 consistent dependencies for targes in "doc" folder makefile 2021-02-01 18:13:00 -05:00
179fbe6172 Merge pull request #2572 from akohlmey/consistent-invoked
Move definition of INVOKED_* constants as enumerator to compute.h
2021-02-01 17:52:57 -05:00
9a419154fa whitespace 2021-02-01 10:15:06 -05:00
5c3b88d938 whitespace 2021-02-01 10:14:31 -05:00
0e9c44d155 IDs are immutable strings 2021-02-01 10:12:13 -05:00
55da46f3e3 add ArgInfo support to some dump styles 2021-02-01 10:12:03 -05:00
fae6fef1ac add tests for DNAME/INAME argument references 2021-02-01 09:39:13 -05:00
3b9f3d989e IDs are immutable strings 2021-02-01 09:08:07 -05:00
660572a0e6 add support for processing "d_" and "i_" for DNAME and INAME, respectively 2021-02-01 09:07:15 -05:00
6d2d3cc33b translated the final compute style to use ArgInfo 2021-02-01 08:01:11 -05:00
26ea789834 add some documentation for the programmer guide and doxygen decorations 2021-01-31 23:06:59 -05:00
d5e6bcd9d3 correctly check for index and dimensionality 2021-01-31 22:13:43 -05:00
99184eb653 correctly use index and dim 2021-01-31 22:06:06 -05:00
2882208e0b must report index1 as 0 for type == ArgInfo::NONE 2021-01-31 22:05:33 -05:00
0f49ce81c7 convert some more files 2021-01-31 21:47:55 -05:00
829e5a7f85 update docs about the organization of sources and relation between classes 2021-01-31 21:06:35 -05:00
48f15e485d put consistent definition of INVOKED_* constants as enumerator into compute.h 2021-01-31 20:13:47 -05:00
f0e4f90608 reformat paragraph 2021-01-31 13:06:10 -05:00
aeaaeed703 clarify and fix typo 2021-01-30 06:08:35 -05:00
3ce92db405 correct path to CMake preset folder in example command 2021-01-30 06:08:17 -05:00
4747e0496a add a bunch of unicode space equivalents 2021-01-30 02:22:49 -05:00
03136ed3e3 two example cases of using the ArgInfo class 2021-01-30 00:51:06 -05:00
c1742aa3d1 add unit tests for ArgInfo class 2021-01-30 00:50:15 -05:00
10834321b0 ArgInfo class for simpler parsing of compute, fix, variable references 2021-01-30 00:49:57 -05:00
065c4939ed relax some unit test epsilons, so the tests pass on MacOS 2021-01-29 18:48:05 -05:00
0e2b528351 add additional heuristics to prevent python unit tests from failing on MacOS 2021-01-29 18:40:24 -05:00
95b445a25a must initialized has_exceptions to avoid false positives in unit tests 2021-01-29 18:38:33 -05:00
72b022c5fa make implicit copy contructor explicit and thus silence compiler warnings 2021-01-29 16:25:32 -05:00
48fa5e6736 fix argument bug 2021-01-29 16:25:32 -05:00
a23e45cc0c remove dead code 2021-01-29 16:25:32 -05:00
461364c006 silence compiler warnings 2021-01-29 16:25:32 -05:00
1312a76dec eliminate use of strtok() by using ValueTokenizer class 2021-01-29 16:25:32 -05:00
222d842b45 Merge pull request #2435 from sramirezh/adding_new_pair
Adding new Wang-Frenkel potential pair style
2021-01-29 16:22:39 -05:00
830ca32fa8 Merge pull request #2479 from james1123581321/master
Updated AGNI pair files and added new AGNI force fields
2021-01-29 15:41:08 -05:00