Commit Graph

24967 Commits

Author SHA1 Message Date
1f109b0db2 update unittest for lammps_config_has_mpi() change 2021-02-17 15:50:45 -05:00
0c34810518 lmp.mpi4py will always be false if LAMMPS has been compiled without MPI support 2021-02-17 15:29:33 -05:00
db841dd412 correct return value when no packages are installed 2021-02-17 15:28:44 -05:00
1552b0d1d6 update/correct documentation for changes to the STUBS library and its implications 2021-02-17 15:19:24 -05:00
61585b1eb6 make MPI STUBS a C++ library so its symbols won't collide when loading a real MPI library 2021-02-17 15:02:02 -05:00
742eebec2d support checking the size of MPI communicators and fail if LAMMPS and mpi4py have a mismatch 2021-02-16 20:22:18 -05:00
f929e57261 avoid loading mpi4py if the LAMMPS executable has been built without MPI 2021-02-16 14:38:03 -05:00
286a15c452 Merge pull request #2604 from akohlmey/collected-small-changes
Correct a few small issues
2021-02-16 14:32:31 -05:00
57b630acbb update documentation for building the manual with PIP_OPTIONS settings 2021-02-16 12:32:37 -05:00
b37ae4aea6 propagate PIP_OPTIONS change to CMake doc build module 2021-02-16 12:26:59 -05:00
395f6f6107 Merge branch 'master' into collected-small-changes 2021-02-16 12:16:14 -05:00
4fdc7a1362 Merge pull request #2602 from ellio167/fixup_kim_cmake
Fixup errors/issues in cmake/Modules/Packages/KIM.cmake
2021-02-16 12:15:44 -05:00
4af8de3287 Merge pull request #2600 from jrgissing/bond/react-same-type-initiators-fix
bond/react: same-type initiators fix
2021-02-16 12:14:22 -05:00
f6454dce64 Merge pull request #2601 from rbberger/update_python_docs
Fix docs of python module after refactor
2021-02-16 12:07:20 -05:00
e7a37877c0 apply changes to doc Makefile to limit the impact of SNL network config changes 2021-02-16 11:40:25 -05:00
7b943948ea Point users to the LAMMPS GitHub Releases page for downloading archives 2021-02-16 06:51:50 -05:00
515da32215 Fixup errors/issues in cmake/Modules/Packages/KIM.cmake 2021-02-15 16:00:47 -06:00
d256614c9f Fix docs after PR #2592 2021-02-15 13:19:25 -05:00
91f74cf956 permissions! 2021-02-13 20:48:31 +00:00
a60853cca6 memory leak
introduced in recent 'create atoms' feature
2021-02-13 14:39:28 -05:00
2aa326c827 bond/react: same-type initiators fix
previously, if/when a reaction happens could depend on the order of listed initiator atoms, if they have the same type, in some cases
2021-02-12 10:56:48 -05:00
d371278765 correct dump style cfg label generation 2021-02-11 07:54:28 -05:00
16004e8f45 Merge pull request #2587 from akohlmey/next-patch-version
Step version strings for next patch release
patch_10Feb2021
2021-02-10 21:30:20 -05:00
8eb79cf329 Merge pull request #2596 from lammps/create-bonds-bugs
fix issues with multiple uses of create_bonds command
2021-02-10 20:35:55 -05:00
5c415a1ba3 use neighbor->nrequest to be safer, since neighbor->nlist may be larger 2021-02-10 20:14:19 -05:00
697f82c145 whitespace 2021-02-10 18:40:25 -05:00
cb7e68644f fix issues with multiple uses of create_bonds command 2021-02-10 16:21:25 -07:00
11d99d9513 Merge pull request #2545 from akohlmey/citation-refactor
Refactor citation handling in LAMMPS
2021-02-10 18:19:21 -05:00
f8a5991416 rearrange output a little bit 2021-02-10 17:43:18 -05:00
6adcb4f5b9 Merge pull request #2594 from lammps/voigt-doc
Voigt documentation
2021-02-10 15:08:11 -05:00
95a4ac157b update a few more comments 2021-02-10 14:27:17 -05:00
006de01c05 update false positives list for spell checking 2021-02-10 12:20:04 -05:00
6c1f1df7e2 Merge pull request #2592 from akohlmey/fix-python-issues
Fix a few python module/interface issues with python2.x
2021-02-10 12:02:19 -05:00
5fecd9ed72 more Voigt clarifications 2021-02-10 09:58:53 -07:00
761527e563 clarified Voigt ordering and non-Voigt ordering for virial[6] 2021-02-10 09:55:28 -07:00
11341a5b66 enforce documented Python version requirement for MLIAP with Python 2021-02-10 08:57:14 -05:00
bbb355b1f5 check error status of calls to Python and if they failed print error and terminate 2021-02-10 00:29:39 -05:00
71139ffc9c change version strings to 10 Feb 2021 2021-02-09 21:34:08 -05:00
2dd3b368cd do not install mliap python support for python 2.x 2021-02-09 20:57:08 -05:00
fff1c0c9a7 rename numpy.py to numpy_wrapper.py to avoid lookup conflicts with python2.7 2021-02-09 20:56:33 -05:00
2beef8580a Merge pull request #2589 from akohlmey/check-python-version-match
Add version check for liblammps vs. python module
2021-02-09 16:22:20 -05:00
cc8d435502 Merge pull request #2591 from akohlmey/collected-small-changes
Correct some inconsistencies
2021-02-09 15:09:12 -05:00
903433d9dd use datetime module to convert string date to numeric date 2021-02-09 14:22:37 -05:00
62a152e4a2 get version number from package version instead of rewriting the __init__.py file 2021-02-09 14:13:18 -05:00
e7bcd1ea43 must purge python/build folder so we don't inherit outdated files 2021-02-09 14:12:43 -05:00
f92e07185b initialize arrays for per-level gridcomm buffers to NULL 2021-02-09 13:21:04 -05:00
418135667f address a whole bunch of spelling issues that suddenly popped up. 2021-02-09 12:38:46 -05:00
653c296246 document __version__ module member and version check 2021-02-09 12:29:14 -05:00
65affd6f12 Merge branch 'master' into check-python-version-match 2021-02-09 11:44:29 -05:00
e706f75d17 fix permissions 2021-02-09 11:44:26 -05:00