Commit Graph

31762 Commits

Author SHA1 Message Date
1f37087156 python 2/3 portability changes for log class from Pizza.py 2022-08-20 22:03:30 -04:00
057dff375c add unit test for Pizza.py modules 2022-08-20 21:59:24 -04:00
eebe07ae73 replace with symbolic links 2022-08-20 20:12:49 -04:00
d0a37644b7 remove redundant copies of pizza.py files 2022-08-20 20:12:31 -04:00
8d6b62d936 sync 2022-08-20 11:14:45 -04:00
d3101898f1 more python 2/3 porting for using compile()/eval()/exec() 2022-08-20 11:06:02 -04:00
bd5dea0d07 allow selecting a list of timesteps. avoid redundant code 2022-08-20 10:26:48 -04:00
77ad9719b3 apply suggestions from @rbberger for more readable code 2022-08-20 10:25:35 -04:00
1d25379ad0 synchronize code between DIELECTRIC package and OPENMP versions 2022-08-19 22:30:49 -04:00
d02ff1d70e correct force and energy tally for using full neighbor lists and newton on/off 2022-08-19 16:33:55 -04:00
aa1762b815 bugfix for writing data files with atom style dielectric 2022-08-19 16:18:13 -04:00
20f7e8dcb5 add change suggested by @hammondkd 2022-08-19 11:26:45 -04:00
cec1a197a4 Merge branch 'develop' into collected-small-changes 2022-08-19 11:24:58 -04:00
66bbfa67dc Merge pull request #3406 from Vikingat-RAGE/develop
Fix vim syntax to handle switching color themes
2022-08-19 11:24:21 -04:00
9b039ce00c port MEAM changes for sc lattice to KOKKOS 2022-08-18 23:05:11 -04:00
9e0e0ce310 add support for Bi to MEAM and sc lattices. taken from unfinished PR #3261 2022-08-18 22:50:03 -04:00
1e5ca42dfa small update 2022-08-18 21:48:09 -04:00
c6c8791aeb silence compiler warning 2022-08-18 06:35:01 -04:00
7b9b056c98 make dump.py files consistent and improve python 2/3 portability 2022-08-18 06:34:49 -04:00
1b979be939 Merge pull request #3392 from akohlmey/minimize-neighbor-check
Update test for neighbor list settings during minimization
2022-08-17 20:55:23 -04:00
c3f57037e6 Merge pull request #3391 from akohlmey/refactor-find-xxx
Continued refactoring of internal APIs and their use
2022-08-17 19:37:20 -04:00
f199e45762 Merge pull request #3244 from akohlmey/shake-with-minimize
Enable use of fix shake or fix rattle during minimization
2022-08-17 18:02:40 -04:00
93c7dab931 Fixed filetype.vim 2022-08-17 14:08:38 -07:00
d1e0af7ef5 discuss why one would want to use check = no during minimization 2022-08-17 16:00:00 -04:00
8e4b79dfa8 Merge branch 'refactor-find-xxx' of github.com:akohlmey/lammps into refactor-find-xxx
# Conflicts:
#	src/fix_temp_rescale.cpp
2022-08-17 15:52:02 -04:00
da0bc7e0e9 whitespace 2022-08-17 15:48:47 -04:00
92c9614429 Merge branch 'develop' into refactor-find-xxx
# Conflicts:
#	src/atom.h
#	src/compute_centroid_stress_atom.cpp
2022-08-17 15:48:26 -04:00
20b87d3cd4 Merge pull request #3398 from hammondkd/cite-reminders
Cite reminders
2022-08-17 15:40:35 -04:00
ca4f7b6579 Merge pull request #3399 from akohlmey/lookup-molecules
Refactor access to molecule templates
2022-08-17 15:29:11 -04:00
daa6b78c43 update documentation 2022-08-17 15:22:59 -04:00
7879a4f837 Fix vim syntax to handle switching color themes
- filetype.vim includes *.in files as lammps input files
- syntax.vim defines the syntax links rather than just creating them
  once
2022-08-17 12:03:10 -07:00
6e8db537c9 Merge pull request #3400 from vpalkar/unit-tests
Adding unit tests and improving errors in region commands
2022-08-17 13:19:27 -04:00
9c211d836c Merge pull request #3403 from crackboy88/improve-errors
improve error messages
2022-08-17 12:21:40 -04:00
8d2fba9197 modernize fixes langevin, press/berendsen, temp/berendsen, temp/rescale 2022-08-17 06:57:38 -04:00
8dbe981a1a modernize fix vector 2022-08-16 22:56:29 -04:00
180e0125ce Improved fix wall/reflect changes 2022-08-17 08:38:43 +08:00
301d379db8 Merge branch 'develop' into refactor-find-xxx 2022-08-16 18:05:33 -04:00
0cac041ad4 avoid segfault when using a custom format with too many format specifiers 2022-08-16 18:03:07 -04:00
d8706ab0cb Merge branch 'unit-tests' of github.com:vpalkar/lammps into unit-tests 2022-08-16 17:03:11 -04:00
5cdc09d9c7 updated region_intersect and region_union to use utils missing cmd args 2022-08-16 16:59:12 -04:00
559ced9869 updated error messages and test for region.cpp 2022-08-16 16:52:19 -04:00
0b047ba22b improved error messages in fix_addforce,fix_indent,fix_setforce,fix_temp_rescale,fix_wall_reflect and thermo.cpp 2022-08-16 20:33:22 +08:00
3f9daa8608 whitespace fixes 2022-08-15 21:48:01 -04:00
bec86f3f04 added some death tests and more readable code for some error messages 2022-08-15 16:16:48 -04:00
43726c020a Merge pull request #3394 from crackboy88/improve-errors
Improve errors
2022-08-15 15:47:47 -04:00
000c63a7ce improved error messages for some more region commands 2022-08-15 15:12:26 -04:00
c1f81eb640 improved error messages in a bunch of region commands 2022-08-15 15:04:18 -04:00
8c83e1f047 Merge pull request #3401 from efposadac/modernize-legacy
Modernize legacy API calls
2022-08-15 14:56:57 -04:00
eb600c7b9d Merge branch 'lammps:develop' into modernize-legacy 2022-08-15 10:55:59 -04:00
d9320c61bb adding test for fix wall/region 2022-08-15 02:13:05 -04:00