Commit Graph

41282 Commits

Author SHA1 Message Date
290aa116f5 Merge branch 'maintenance' of github.com:lammps/lammps into maintenance 2025-06-27 15:00:34 -04:00
bda0e59177 backport KOKKOS fixes from upstream 2025-06-27 14:51:39 -04:00
3b07abbf5f make fix deposit and fix pour compatible with body particles from molecule templates 2025-06-21 17:17:52 -04:00
cf45119a70 avoid out-of-bounds memory access when registering fix external callbacks 2025-06-21 16:45:24 -04:00
849b6fc95d add missing check for atom-ids 2025-06-21 14:32:46 -04:00
9ef8f8590e Revert "there is no need to using tagints in molecule templates"
This breaks neighbor list builds in template mode.

This reverts commit 3eae4066f3.
2025-06-21 12:31:42 -04:00
3a3ba77ced make python lammps_open() unit test compatible with mpi4py version 4 2025-06-21 11:57:04 -04:00
3eae4066f3 there is no need to using tagints in molecule templates 2025-06-21 11:49:55 -04:00
eae76faa1f fix up special_read() function to honor atom-IDs 2025-06-21 11:49:32 -04:00
2818f86bdf Merge branch 'maintenance' of github.com:lammps/lammps into maintenance 2025-06-20 23:03:17 -04:00
f03fd33137 correctly honor atom-id in Special Bond Counts section 2025-06-20 23:03:02 -04:00
0562db29cb stricter matching of header keywords 2025-06-20 14:12:57 -04:00
857c413572 must require Masses section with Body sections 2025-06-20 08:43:47 -04:00
df776c0dc1 correctly count created bodies 2025-06-20 08:22:33 -04:00
f0ffce3940 correct error message 2025-06-20 03:08:46 -04:00
ae66910c7b fix indexing bugs in Shake Atoms and Shake Bond Types sections 2025-06-18 03:40:24 -04:00
6c791477ae fix out-of-bounds initialization for cvatom array 2025-06-17 17:02:15 -04:00
9ffa9c6eb1 fix out-of-bounds access bug reported in issue #4632 2025-06-17 16:42:45 -04:00
5a4d659fc3 backport fixes from upstream to make molecule command behave like documented 2025-06-17 14:49:22 -04:00
32e3c1c2df error out of compute msd if the number of atoms in the compute group changes 2025-06-17 06:01:10 -04:00
c7162f96f5 update changelog 2025-06-14 19:15:34 -04:00
abdb785ca5 update label only when needed 2025-06-14 19:15:24 -04:00
0a0850ddf8 move redundant code to find pointer to main widget to helper function 2025-06-14 19:15:16 -04:00
59f3f52304 Merge branch 'stable' into maintenance 2025-06-14 18:21:10 -04:00
d35cdbc074 add error to CreateAtoms for per-atom systems 2025-06-14 05:19:47 -04:00
c64945060d flag branch as maintenance branch again 2025-06-13 02:14:29 -04:00
81980666de Merge pull request #4531 from lammps/maintenance
Third Set of Collected Bug Fixes and Maintenance Updates for 29 August 2024 Stable Release
stable_29Aug2024_update3
2025-06-12 23:06:51 -04:00
7d4757e745 Fix GPU architecture in CUDA preset for Kokkos 2025-06-12 19:48:54 -04:00
e7bbc48097 Revert "Insert pre-titlepage text asking about removal of PDF version."
This reverts commit 8bcb6cc9ff.
2025-06-12 11:59:02 -04:00
3454810c80 dipole moment z-component must be zero for 2d sims 2025-06-11 21:33:20 -04:00
71ee3ea7aa unscale for error message. use correct array for masses 2025-06-11 17:37:38 -04:00
74b1f10bbd backport bugfix for segfaulting (kspace) styles from plugins from upstream 2025-06-11 03:55:04 -04:00
8bcb6cc9ff Insert pre-titlepage text asking about removal of PDF version. 2025-06-10 19:52:10 -04:00
32dbf9a2e9 flag version as stable update 2025-06-09 00:46:19 -04:00
a21ade450e sync with upstream 2025-06-07 21:50:16 -04:00
eeaea74e71 record changes to LAMMPS-GUI for flatpak build 2025-06-07 21:38:04 -04:00
ec3c04bb9c add special case for setting locale on macOS based on suggestion from OVITO developers 2025-06-07 21:13:53 -04:00
7c89fa1492 accept denormal floating point numbers in tokenizer class and utils::numeric() 2025-06-04 21:08:48 -04:00
741a3175a6 remove undesired tag from test yaml file 2025-06-03 02:24:59 -04:00
7cb10a480a sync application of LAMMPS integer size settings with upstream 2025-06-02 23:50:00 -04:00
62cfa3151c apply -DLAMMPS_${LAMMPS_SIZES} consistently across all platforms 2025-06-02 20:29:59 -04:00
a3a67ef3f3 fix minimum image bug detected by GitHub Copilot 2025-05-31 23:28:52 -04:00
64d7bbb375 Bugfix from Trung for running EAM on GPUs with OpenCL. 2025-05-30 16:43:16 -04:00
602088f60b Marking scalar intensive in elec/stop/fit fix 2025-05-30 10:09:11 -04:00
ff19f3406c silence compiler warnings 2025-05-30 00:03:22 -04:00
d7f281f494 cstdbool header is deprecated and no longer needed with recent compilers 2025-05-29 23:51:29 -04:00
ba2ea35210 avoid problems with consteval 2025-05-29 23:43:30 -04:00
00907af0df eliminate warning (doesn't change results since we don't compute pair forces) 2025-05-29 03:51:14 -04:00
ff6df29692 update magic file and point to origin 2025-05-29 03:50:45 -04:00
29aba1d068 improve warning and explanation about too short communication cutoff 2025-04-30 16:47:59 -04:00