Commit Graph

12414 Commits

Author SHA1 Message Date
2f6bbcfbbc output detailed multi-thread performance data only with "timer full" 2017-06-09 15:11:40 -04:00
2686b7f830 simplify compatibility check for fix reax/c/bonds with pair styles 2017-06-09 14:39:52 -04:00
d3a863e7af when identifying molecules/clusters fall back to unfiltered coordinates for ghost atoms 2017-06-09 14:35:12 -04:00
64e8000720 expand error message requiring a reax/c derived pair style 2017-06-09 11:42:35 -04:00
c160d0cd5e fix reax/c/species/omp doesn't is not needed anymore 2017-06-09 11:04:11 -04:00
9222278fb5 match reax/c pair style variants against prefix and not full name 2017-06-09 11:00:16 -04:00
3025996407 Merge branch 'master' into add-user-reaxc-omp
This updates the code base with several required updates from master
2017-05-31 12:53:38 -04:00
d2b6559039 Fixing issue in fix_qeq_reax 2017-05-31 10:52:03 -06:00
286d4f2743 Merge pull request #506 from lammps/snap
SNAP changes by Aidan
2017-05-30 13:32:00 -06:00
952b18fc02 Merge pull request #494 from rbberger/small_updates
Collection of minor updates
2017-05-30 10:51:24 -06:00
816fa93429 Merge pull request #499 from akohlmey/add-fix-compute-style-bugfix
Fix bug where fix/compute style names were not correctly set with suffixes
2017-05-30 10:49:27 -06:00
f4f975edd6 Merge pull request #495 from akohlmey/doc-fixes
Collected small updates and bugfixes
2017-05-30 10:48:57 -06:00
cff4e4a837 Merge pull request #468 from andeplane/gcmc_fix_nlocal
Using correct value for atom->nlocal in translate/rotate in fix_gcmc.cpp
2017-05-30 10:45:39 -06:00
32db4660bd Merge pull request #460 from andeplane/gcmc_fix
Setting molecule COM to 0 after moving atoms
2017-05-30 10:45:23 -06:00
22fdb1fc14 SNAP changes by Aidan 2017-05-30 10:21:07 -06:00
412cb8f089 avoid hang in fix reax/c/species when multiple atoms have the exact same x-coordinate 2017-05-30 08:15:55 -04:00
092806ad4f no need for special whitespace handling in library interface 2017-05-30 07:55:48 -04:00
4ae314731d must not use strtok() in library function as it is not re-entrant and may be used inside LAMMPS commands 2017-05-30 07:42:10 -04:00
4b8d2e829c triclinic member variable is referenced in destructor and thus must be initialized in constructor 2017-05-30 07:41:01 -04:00
d93938f7e1 displace_atom rotate needs to operate on unwrapped coordinates with image flags set to zero 2017-05-29 16:57:35 -04:00
c0339120d2 add missing neighbor list class definitions to USER-OMP 2017-05-26 21:28:41 -04:00
5a23d2d1da fix bug in computing mixed EAM potentials introduced by TI modifications 2017-05-26 20:28:45 -04:00
de446ace2f Merge branch 'user-manifold-doc-fix' of https://github.com/Pakketeretet2/lammps into doc-fixes 2017-05-26 18:44:29 -04:00
2055110e05 Fixed typo in dox. 2017-05-26 17:38:21 -04:00
5b1e582f03 prevent segfault when defining pair_style comb3 without arguments 2017-05-26 10:52:20 -04:00
f1ec6dc41a dead code removal and reformatting 2017-05-25 18:55:07 -04:00
c3f6e27bfe augment documentation for newly added multi-threaded reax/c styles 2017-05-25 17:00:19 -04:00
0a2fe70511 remove redundant code from fix qeq/reax and qeq/reax/omp 2017-05-25 16:31:31 -04:00
53e7fee5b7 Merge branch 'doc-fixes' of github.com:akohlmey/lammps into doc-fixes 2017-05-25 10:11:31 -04:00
5291f2ed6e fix bug in fix shear/history reported by kevin hanley. see #500 2017-05-25 10:11:24 -04:00
99a68e487f fix suffix style handling bug for adding fixes and computes 2017-05-25 02:01:04 -04:00
271431ab18 clean up code so it can be compiled with and without OpenMP enabled regardless of whether the USER-OMP package is installed 2017-05-24 17:25:57 -04:00
88d4150d2b remove trailing whitespace 2017-05-24 16:29:56 -04:00
0e3cfbc007 remove trailing whitespace 2017-05-24 16:29:26 -04:00
5345ad2da7 merge in the remainder of the USER-REAXC-OMP code. still a lot of work to do. compiles only with -fopenmp active 2017-05-24 16:24:43 -04:00
ead05f81c0 Merge branch 'pair_morse_soft-doc-fix' of https://github.com/Pakketeretet2/lammps into doc-fixes 2017-05-24 13:56:54 -04:00
4f9e7cbd16 Cleaned up docs for pair_mores, a missing :pre ruined formatting. 2017-05-24 13:36:14 -04:00
bb890941ca first chunk of code from USER-REAXC-OMP imported and adapted into USER-REAXC 2017-05-24 00:19:36 -04:00
bdfb7c69ea Remove unused code detected by coverity CID 177700 2017-05-22 17:51:40 -04:00
084626e60b Fixes coverity issue CID 179426 2017-05-22 17:36:16 -04:00
a7d790a827 Fixes coverity issue CID 179439 2017-05-22 17:33:47 -04:00
8a630ff4ec Fixes coverity issue CID 179440 2017-05-22 17:32:07 -04:00
617ca4e0c8 Fixes coverity issue CID 179436 2017-05-22 17:30:46 -04:00
06a4f47a4c Merge remote-tracking branch 'upstream/master' into small_updates 2017-05-22 17:14:29 -04:00
4780d72809 use '&&' and '||' instead of 'and' and 'or' operators for consistency 2017-05-22 14:42:42 -04:00
97d3c843c4 small documentation fixes to fix typos and formatting issues 2017-05-21 11:13:47 -04:00
2225fce94e patch 19May17 patch_19May2017 2017-05-19 07:35:36 -06:00
9593e05c9e Force PDF documentation build to fail on first error 2017-05-18 19:37:08 -04:00
941b737319 Merge pull request #493 from akohlmey/doc-and-example-fixes
Doc and example fixes
2017-05-18 16:40:46 -06:00
654e09e999 correct input examples affected by the Pair::settings() bugfix 2017-05-18 18:34:27 -04:00