Commit Graph

28699 Commits

Author SHA1 Message Date
3efddc4fb6 whitespace 2021-12-14 14:50:38 -05:00
5051055c76 Remove dead code and move nchunk read to read_header 2021-12-14 14:33:17 -05:00
80819f3793 reverse skip_buf with chunk 2021-12-14 11:09:36 -05:00
7c3deaa04b limit the skip buf to MAXSMALLINT 2021-12-13 23:03:10 -05:00
b1d0dd65ea simply the while loop and add correct initial m value 2021-12-13 22:57:39 -05:00
d4cec8ebe7 handle block reading in ReaderNative::read_atoms when binary is True 2021-12-13 21:38:16 -05:00
ff41864cd9 remove redundant deletes 2021-12-13 15:28:27 -05:00
cdc831bb89 Update src/reader_native.cpp
Co-authored-by: Richard Berger <richard.berger@temple.edu>
2021-12-13 12:23:30 -08:00
f3543a839e Update src/reader_native.cpp
Co-authored-by: Richard Berger <richard.berger@temple.edu>
2021-12-13 12:23:21 -08:00
3eae7b4200 Update src/reader_native.cpp
Co-authored-by: Richard Berger <richard.berger@temple.edu>
2021-12-13 12:23:14 -08:00
af2e295ac2 Update src/reader_native.cpp
Co-authored-by: Richard Berger <richard.berger@temple.edu>
2021-12-13 12:22:57 -08:00
bb6d581ef8 Update src/reader_native.cpp
Co-authored-by: Richard Berger <richard.berger@temple.edu>
2021-12-13 12:22:39 -08:00
94d5c75fdf small updates for docs and comments 2021-12-12 18:11:33 -05:00
7db29112d8 replace read_buf to skip_buf in skip function 2021-12-12 00:26:55 -05:00
913b1536d4 whitespace 2021-12-11 21:18:33 -05:00
274b14618f fold match_fields() back into read_header() function 2021-12-11 21:17:41 -05:00
e23a2bfb55 Merge branch 'rerun_bin' of github.com:nw13slx/lammps into rerun_bin
# Conflicts:
#	src/reader_native_bin.cpp
2021-12-11 21:05:01 -05:00
87501347ad add minimal unit tests for reading binary dumps 2021-12-11 21:03:32 -05:00
0603dc6323 whitespace 2021-12-11 20:46:24 -05:00
86b696c78c Merge branch 'develop' into rerun_bin 2021-12-11 20:31:48 -05:00
56fd07d88e fold native binary reader class in to native reader class 2021-12-11 20:31:44 -05:00
565c8d6589 use fseek to skip bufs 2021-12-11 20:02:32 -05:00
8884acef24 Revert "add to compress read"
This reverts commit b22c409079.

# Conflicts:
#	src/platform.cpp
2021-12-11 19:40:21 -05:00
d7bb9b5f30 reverse clang-format on irrelevant lines 2021-12-11 17:49:29 -05:00
b22c409079 add to compress read 2021-12-11 17:44:41 -05:00
626889f534 move the rb mode to the overloaded open_file function 2021-12-11 17:36:29 -05:00
d59458fa37 clean up commands and documentation 2021-12-11 17:24:27 -05:00
8f99d8d1d9 fix skip bugs 2021-12-11 16:41:13 -05:00
250a5921a3 move match_field to protected method and format the docstring 2021-12-11 14:25:29 -05:00
2cdafb49a2 remove variable names from func declaration 2021-12-11 14:14:06 -05:00
e9f0351b67 reverse formatting on irrelevant files 2021-12-11 14:10:47 -05:00
eff26ba0b3 add read_buf method and fix bugs in inheritance 2021-12-11 14:02:58 -05:00
b1e7333348 remove wrong compression mode 2021-12-11 12:32:17 -05:00
7ab5d4edd4 add new ReaderNativeBin class 2021-12-11 11:54:21 -05:00
4f34c4374b Merge pull request #3053 from stanmoore1/kk_desul
Enable Kokkos Desul atomics in Makefile to match CMake settings
2021-12-11 06:12:50 -05:00
abd3df0c5a Merge pull request #3040 from akohlmey/collected-small-changes
Collected small changes and bugfixes
2021-12-10 15:51:13 -05:00
fc64fca3d9 Whitespace 2021-12-10 13:34:38 -07:00
6bd3ddf908 Don't use fetch variant of atomic if not needed 2021-12-10 13:27:57 -07:00
e49b7d0514 Remove atomics for error/warning flags since they are not needed 2021-12-10 13:14:12 -07:00
0ab0e2747c Update comment 2021-12-10 12:15:10 -07:00
7aeab56eb2 Enable Kokkos Desul atomics in Makefile to match CMake settings 2021-12-10 12:09:32 -07:00
fa8e2ccee8 Merge pull request #2958 from jddietz/nm_split_styles
nm split styles
2021-12-10 13:42:31 -05:00
6140503158 update local/density examples to follow conventions more closely 2021-12-10 08:50:58 -05:00
14fc42833f modernize potential file reader for local/density 2021-12-10 08:45:01 -05:00
3fc0ea3e80 correct names of the pack/unpack routines for forward communication 2021-12-09 18:30:54 -05:00
a975d0506a update examples for pair style local/density 2021-12-09 18:21:32 -05:00
e1e46b5322 Merge pull request #3033 from rbberger/unittest_tags
Add tags to force-style unit tests
2021-12-09 18:11:08 -05:00
146c6fe5ff remove check that is no longer needed 2021-12-09 18:08:43 -05:00
0e4e830c79 document "slow" and "unstable" labels for unit tests 2021-12-09 17:02:20 -05:00
0d44c56ccc use comma consistently 2021-12-09 15:50:57 -05:00