Commit Graph

21367 Commits

Author SHA1 Message Date
d6e062d0b9 Update BondTable 2020-06-02 15:42:23 -04:00
392a4f4e06 Update AngleTable 2020-06-02 15:28:46 -04:00
7658d05c73 Add TableFileReader 2020-06-02 15:11:53 -04:00
d478ad2ccb Refactor PotentialFileReader 2020-06-02 15:11:30 -04:00
24a0933e2a Refactor PotentialFileReader 2020-06-02 14:18:11 -04:00
60f17e7397 Add filesystem utils functions 2020-06-02 14:11:09 -04:00
5c01c5c4af make internal name for test consistent with external name 2020-06-02 07:41:10 -04:00
def79f246a Update fix_eco_force.rst 2020-06-02 10:35:22 +02:00
b9cec30c2b add test for exceptions with incompatible format 2020-06-01 22:18:45 -04:00
c6d04343e3 add tests for custom large integer type conversions 2020-06-01 19:09:27 -04:00
644ef3da4c add LAMMPS copyright header 2020-06-01 19:08:59 -04:00
005fe9db8b add initial unit test for {fmt} testing only conversions frequently used by LAMMPS 2020-06-01 17:50:00 -04:00
886a950fd6 silence compiler warning in test programs 2020-06-01 17:49:05 -04:00
981cfd42f6 Merge pull request #2120 from lammps/next_lammps_version
Update version strings for the next patch release
patch_2Jun2020
2020-06-01 15:08:09 -04:00
5193ee7035 Merge pull request #2106 from jrgissing/bond/react-molecule-fragment-support
Bond/react: molecule fragment support
2020-06-01 14:42:14 -04:00
8b61b12921 Add missing initialization of potential_name 2020-06-01 13:53:36 -04:00
ff6675e4d8 Update docs for fix wall/gran and wall/gran/region 2020-06-01 12:00:27 -04:00
f5ea01e901 Clear wall/gran contacts before each calculation 2020-06-01 11:18:07 -04:00
1ca236da7e Merge pull request #2119 from akohlmey/more-test-files
More unit test files
2020-06-01 10:21:23 -04:00
b81826131b Merge branch 'master' into bond/react-molecule-fragment-support 2020-05-31 16:34:41 -04:00
09ce0d1198 rephrase to use more common term 2020-05-31 16:33:37 -04:00
e449cdf924 Merge pull request #2103 from lammps/add-fmt-lib
Use {fmt} in LAMMPS to simplify formatted output
2020-05-31 12:02:15 -04:00
acf280811a step version strings for next patch release 2020-05-31 11:14:50 -04:00
7ab55a868f remove unneeded justification marker 2020-05-31 10:45:32 -04:00
88cedc2784 add a bunch of tests for utils::strmatch() 2020-05-31 10:36:44 -04:00
4a21ad7b3d expand tests for valid and invalid numbers 2020-05-31 10:14:09 -04:00
f5be01e4f1 sync with header 2020-05-31 10:05:39 -04:00
89bffb2ee9 add extra parenthesis to indicate that assignment is intentional in logical expression 2020-05-31 10:05:22 -04:00
4f169e99e6 silence compiler warnings: const has no effect on return type 2020-05-31 09:49:22 -04:00
ee90796679 Merge branch 'master' into add-fmt-lib
# Conflicts:
#	src/lammps.cpp
#	src/utils.cpp
2020-05-31 09:45:54 -04:00
7ebad52727 add tests for a bunch of coulomb only pair styles 2020-05-31 09:26:54 -04:00
633b66d4c9 correct forces in single function and simplify a little 2020-05-31 09:26:26 -04:00
661b0ee8b2 cannot compare Pair::compute() vs. Pair::single for styles with coul/dsf or coul/wolf due to missing self energy 2020-05-31 09:25:50 -04:00
64b684eec3 add tests for a whole bunch of CHARMM pair styles 2020-05-31 08:34:25 -04:00
1493ae5c87 correct force calculation in lj/charmm/coul/msm/omp 2020-05-31 08:33:26 -04:00
a820b7d3fc fix bug in r-RESPA neighborlist setup for lj/charmmfsw/coul/long 2020-05-31 08:33:05 -04:00
f7a0f6671c fix factor 0.5 bug in lj/charmm/coul/charmm/implicit/omp 2020-05-31 07:19:36 -04:00
eb60b049fc add endpoint gradients for two bond tables 2020-05-30 21:49:42 -04:00
91272e7654 output endpoint gradient for some angle tabulations 2020-05-30 21:36:47 -04:00
bb8f6e94d3 Merge pull request #2113 from rbberger/tokenizer
Refactoring to reduce strtok usage
2020-05-30 21:13:12 -04:00
0f6e963058 add a whole bunch of angle style tests 2020-05-30 21:10:48 -04:00
69ba5ea9f0 use a smaller bond table 2020-05-30 21:05:03 -04:00
814082a23b Merge pull request #2105 from ndtrung81/rigid-nve-norot
Fixed an issue with fix rigid/nve for bodies with very small values of inertia moments
2020-05-30 19:49:08 -04:00
f33584cfb2 fix missing factor of 2 bug in single function 2020-05-30 18:37:54 -04:00
f4431d0525 remove dead code 2020-05-30 18:00:23 -04:00
bd4d4bc015 update bond/angle yaml files for changed equilibrium keyword syntax 2020-05-30 17:51:29 -04:00
1042e16423 change format for equilibrium values and update writer and reader code, so it will become compatible with class2 angles/dihedrals/impropers 2020-05-30 17:50:38 -04:00
07163a710a correct bond table coefficients to find the table file 2020-05-30 17:22:33 -04:00
e32409d32c add tests for most bond styles except FENE type bonds 2020-05-30 10:44:40 -04:00
1452e6dfca reduce displacements in single test for pair styles 2020-05-30 10:23:52 -04:00