Commit Graph

22910 Commits

Author SHA1 Message Date
4ad6d99ca0 updated documentation files: "pg_developer.rst", "math_eigen.h", and "false_positives.txt" 2020-09-05 20:08:45 -07:00
7cb774e6bc some corrections before rewriting the doxygen comments to comply with LAMMPS doxygen style. 2020-09-05 16:37:15 -07:00
4b66414bdf fixed a type error in math_eigen.h 2020-09-05 10:38:14 -07:00
58fa72ddc5 replaced all numerical recipes jacobi() code with code from "math_eigen.h". moved "math_eigen.h" into the main "src" directory. 2020-09-05 10:19:19 -07:00
57f82abae3 updated all code in LAMMPS to use the open-source "math_eigen.h" instead of "math_extra.h". Code in "lib" now uses its own abbreviated local version of the "math_eigen.h" file (which is named "jacobi_pd.h"), since it is not clear how code from "lib/" can access the code in "src/" 2020-09-05 01:39:27 -07:00
7f6fc8a003 updated math_eigen.h and moved it into the main "src" directory 2020-09-04 04:10:47 -07:00
24f5807623 Merge pull request #2319 from akohlmey/move-convenience-functions
Move some more convenience functions to utils namespace
2020-08-31 14:29:42 -04:00
54ed23448b instantiate bounds() also with long long to make windows happy. 2020-08-31 14:14:51 -04:00
675cf20e93 Merge remote-tracking branch 'github/master' into move-convenience-functions 2020-08-31 12:58:21 -04:00
22ccde1d13 modernize utils::bounds() implementation and remove duplicate definition. 2020-08-31 12:58:00 -04:00
9a4ec23c7f Merge pull request #2327 from akohlmey/remove-doxygen-tool
Remove doxygen tool folder and references to it in the manual
2020-08-31 12:49:24 -04:00
7fca3b7a65 revert accidental change 2020-08-31 12:46:22 -04:00
1ff34d4b13 avoid doxygen lookup ambiguity 2020-08-31 12:46:05 -04:00
67a5db03c7 Merge pull request #2326 from ndtrung81/gpu-update-makefiles
update makefiles in lib/gpu for more recent architectures
2020-08-31 12:30:28 -04:00
0c7b9a7c63 update utils tester for API change in bound()/boundsbig() 2020-08-31 11:43:25 -04:00
dd03c7232a Merge remote-tracking branch 'github/master' into move-convenience-functions 2020-08-31 11:41:18 -04:00
a4d3b21a43 Merge pull request #2322 from Vsevak/cmake_cuda
Fix CMake building for CUDA 11
2020-08-31 11:33:52 -04:00
cf11945e21 get rid of utils::boundsbig() by making it a template function with two specializations 2020-08-31 11:25:43 -04:00
8034a83ee8 Merge pull request #2325 from akohlmey/fortran-interface
New Fortran interface to LAMMPS
2020-08-31 10:27:10 -04:00
3c71d300e5 Merge pull request #2320 from akohlmey/programmer-guide
Add programmer guide part 2
2020-08-31 10:06:04 -04:00
c7360fb808 include example use of PotentialFileReader class 2020-08-31 07:45:52 -04:00
c84033677c add documentation for potential file reader 2020-08-31 07:31:28 -04:00
33f2cbc713 add docs for TextFileReader class to developer guide 2020-08-31 06:57:16 -04:00
39a9974f3d add ValueTokenizer example and use captions with code-blocks 2020-08-30 23:57:02 -04:00
569b6f95a3 no need to use ValueTokenizer. Make code more compact. 2020-08-30 23:32:17 -04:00
e8e57b0628 remove doxygen tool folder and references to it in the input as it is no longer compatible and needed 2020-08-30 19:59:52 -04:00
ecb1f266b5 More updates 2020-08-30 15:10:29 -05:00
7a5f193c02 Updated several Makefile's in lib/gpu for newer compute capabilities 2020-08-30 15:06:44 -05:00
4484699ab6 fix spelling 2020-08-30 15:52:42 -04:00
65d2ee7464 add work-in-progress marker to fortran library wrapper 2020-08-30 15:23:02 -04:00
199cfeba78 more tweaks. doxygen translation has no more warnings now. 2020-08-30 14:32:53 -04:00
cd0cdf0b74 silence compiler warning 2020-08-30 14:28:29 -04:00
f3ed1dea4d minor tweaks 2020-08-30 14:28:19 -04:00
8d45b724a6 fix bug in conventional build makefile preventing the correct Install.py in the lib folder to be run 2020-08-30 14:12:53 -04:00
4b0999e167 complete documentation of tokenizer classes 2020-08-30 14:12:21 -04:00
5623009962 arch 3.0 is dropped in CUDA 11 2020-08-30 13:12:42 +03:00
96ee132e85 start documenting tokenizer classes 2020-08-30 01:50:37 -04:00
8d2c16ad66 remove trailing whitespace 2020-08-30 00:31:04 -04:00
f123246189 minor doc updates 2020-08-30 00:25:01 -04:00
ceeaf1e988 update and correct documentation for utils functions 2020-08-29 23:51:46 -04:00
9c404e02fd update include file conventions 2020-08-29 22:56:37 -04:00
83a9e5e724 handle spelling issues with new doc text 2020-08-29 22:55:05 -04:00
e51a5ad8f4 import doxygen docs for new utils functions 2020-08-29 22:46:25 -04:00
4396dbd9a3 move Force::open_potential() to utils::open_potential() 2020-08-29 22:37:14 -04:00
798226967f Merge branch 'move-convenience-functions' of github.com:akohlmey/lammps into move-convenience-functions 2020-08-29 22:22:45 -04:00
6b7f4c500f document changes to LAMMPS_POTENTIALS environment variable 2020-08-29 22:22:27 -04:00
5a22f4d7f2 support that LAMMPS_POTENTIALS is a real path variable with multiple entries, not just a single folder 2020-08-29 22:22:03 -04:00
b06ba74d18 support that LAMMPS_POTENTIALS is a real path variable with multiple entries, not just a single folder 2020-08-29 22:09:07 -04:00
05ff352021 add utils::open_potential() function to utils namespace 2020-08-29 22:08:16 -04:00
7413dc783e add tokenizer tests for splitting path environment variables 2020-08-29 22:07:22 -04:00