Commit Graph

414 Commits

Author SHA1 Message Date
ea512ce2bb update comments about which files to keep synchronized for consistency 2022-10-03 09:22:28 -04:00
da2f7f6fad Forgot to put LMP_VAR_VECTOR in the documentation 2022-09-30 20:14:40 -05:00
9183c0e1c8 Removed commented-out line now that I know it works 2022-09-30 20:02:23 -05:00
a323e09822 Merge branch 'lammps:develop' into fortran-further-tinkering 2022-09-30 19:40:32 -05:00
756d24ff9e Implemented vector-style variables in C, Python, and Fortran APIs; unit test and more for Fortran/extract_variable 2022-09-30 16:02:26 -05:00
a7071fea78 Wrote docs for extract_fix,extract_variable; fixed python so it knows about string variables; doc typo fixes; part of extract_variable unit test 2022-09-29 19:28:15 -05:00
1d4297e2dd Implemented extract_fix, extract_variable, flush_buffers; unit test for extract_fix 2022-09-28 22:09:26 -05:00
3e9dca3017 Implement alternate and recommended way to set properties of abstract base class
See: https://github.com/lammps/lammps/security/code-scanning/476
2022-09-26 21:01:22 -04:00
be98b5a168 Merge pull request #3458 from Boogie3D/mliappy_unified
MLIAP Unified Interface
2022-09-26 20:33:17 -04:00
59ca352e48 whitespace 2022-09-24 15:34:41 -04:00
49a3be17cb c-library functions should be always present, documented, and lowercase 2022-09-24 03:07:24 -04:00
5aad045686 Improve incompatible python interpreter warning 2022-09-23 16:51:20 -06:00
86d1aacf7e add function to dispatch LAMMPS errors to library interfaces 2022-09-23 16:28:15 -04:00
3d7a31a59f Merge branch 'lammps:develop' into mliappy_unified 2022-09-09 14:03:43 -06:00
e563eb41c1 Remove unnecessary comments 2022-09-06 09:08:42 -06:00
341f5cf40d Ensure all subnets are proper dtype 2022-09-06 08:40:43 -06:00
bd7a7d4f74 Working MD with 2 atom types 2022-09-06 08:21:01 -06:00
d5ae116a89 Rename mliap_unifiedpy.pyx to mliap_unified_couple.pyx, fix references 2022-09-01 02:57:48 -06:00
a17e3e2350 Add init parameters to Unified LJ example 2022-09-01 02:43:16 -06:00
eebe07ae73 replace with symbolic links 2022-08-20 20:12:49 -04:00
d0a37644b7 remove redundant copies of pizza.py files 2022-08-20 20:12:31 -04:00
8d6b62d936 sync 2022-08-20 11:14:45 -04:00
7b9b056c98 make dump.py files consistent and improve python 2/3 portability 2022-08-18 06:34:49 -04:00
0ba0a382c3 Merge branch 'mliappy_unified' of github.com:Boogie3D/lammps into mliappy_unified 2022-08-16 02:36:23 -06:00
7a76a6ee36 Implement python-side unified support, add example 2022-08-16 02:35:31 -06:00
06285556c9 Move unified L-J initialization to definition 2022-08-16 02:34:15 -06:00
af5eacfe8c Merge branch 'lammps:develop' into mliappy_unified 2022-08-10 21:58:37 -06:00
f1cca7d37d Update __init__.py 2022-08-10 12:22:29 -06:00
fd2ab2a8b9 Update __init__.py 2022-08-08 12:08:46 -06:00
953d2c738b Update __init__.py 2022-08-08 11:45:43 -06:00
2227de3231 Update __init__.py 2022-08-07 23:00:35 -06:00
2d3504ff0f Locate correct dynamics library directories
in Anaconda Environments
2022-08-07 22:54:59 -06:00
2b126a00b1 update Pizza.py URLs 2022-07-29 19:23:23 -04:00
f966b53bd2 Merge branch 'lammps:develop' into mliappy_unified 2022-07-14 02:11:45 -06:00
ac615059a7 update some linewraps for 100 col limit 2022-06-20 18:15:02 -04:00
ffc5b12c5f correct handling data of local computes which always needs to check rows and cols 2022-06-20 18:10:57 -04:00
deac9f05b1 move the created wheel to the build folder at the end 2022-06-17 08:05:28 -04:00
18f9e5836b support installing the built wheel into virtual environment, if active 2022-06-17 06:52:25 -04:00
21b3020a97 make the "makewheel.py" script independent from the activate_this.py script
The "activate_this.py" script only seems to be included in virtualenv,
but not venv. Now we implement its effect directly.
2022-06-17 00:10:06 -04:00
7a64d1358e remove unused module 2022-06-14 10:36:11 -04:00
ef48fd2d9c remove unused imports 2022-06-12 23:36:43 -04:00
886ad8359e use venv instead of virtualenv 2022-05-28 04:45:52 -04:00
1aaa9ca4ae Added documentation for verbose option 2022-05-24 12:02:34 +02:00
b66702c285 Added verbose class option + removed empty output lines 2022-05-24 11:37:44 +02:00
a43b24781c Merge branch 'develop' into mliappy_unified 2022-05-20 11:26:54 -06:00
baa48946e5 add comment to please CodeQL 2022-05-18 00:56:10 -04:00
168d3bdd3c Correctly handle the case that the YAML python module is not installed 2022-05-14 10:15:40 -04:00
3045f1d3cb Add pickle method to base class 2022-05-13 14:45:44 -06:00
ebbace403a Initial commit of mliap unified work 2022-04-15 14:22:46 -06:00
8ce2ce8fd4 remove unused import 2022-04-09 04:02:01 -04:00