Commit Graph

19995 Commits

Author SHA1 Message Date
5109b7f1b1 correct incorrect spelling correction 2020-03-17 20:45:52 -04:00
9ebd1e4572 convert british spelling to american 2020-03-17 20:41:49 -04:00
0e764a3a48 correct spelling correction 2020-03-17 20:37:33 -04:00
7f53cbc1a0 fix grammar issue 2020-03-17 20:33:37 -04:00
e000c46c8c correct spelling 2020-03-17 20:29:18 -04:00
649a8cc01a Fix typo 2020-03-14 13:57:48 +09:00
fa7085be07 Merge pull request #1930 from giacomofiorin/remove-lepton-cxx11-check
Remove now unneeded check for C++11 in Lepton CMake build
2020-03-12 13:09:44 -04:00
3b73b88b57 Merge pull request #1926 from akohlmey/doc-cleanup
Documentation cleanup
2020-03-12 11:49:54 -04:00
de6d1efe7a Remove now unneeded check for C++ standard in Lepton CMake build 2020-03-12 10:33:48 -04:00
010b1f7434 more conversion of parsed-literal to code-block and a bunch of other issues 2020-03-12 08:11:10 -04:00
524b37598f correct various misspelled words and remove corresponding false positives 2020-03-12 06:25:42 -04:00
1372c20d94 Merge branch 'DOI' of github.com:e-kwsm/lammps into doc-cleanup 2020-03-12 05:43:44 -04:00
8af9d40392 Update DOI resolver
https://www.doi.org/doi_handbook/2_Numbering.html#htmlencoding
2020-03-12 16:53:24 +09:00
23a402ddd3 convert all remaining compute styles to use code-block instead of parsed literal 2020-03-12 01:56:13 -04:00
c6f846b925 converter tool for inlining external math is no longer needed 2020-03-12 01:20:30 -04:00
7e656b6cea convert more LAMMPS script examples to use code-block instead of parsed-literal 2020-03-12 01:11:38 -04:00
2775ebeb9d update trilinos URL 2020-03-12 00:47:00 -04:00
8a799c4b5f update cslib URLs to use https:// 2020-03-12 00:46:50 -04:00
30817162b9 update moltemplate URL to https:// 2020-03-12 00:42:23 -04:00
2c3d196ce8 remove broken link 2020-03-12 00:41:57 -04:00
3317f90940 update plumed URLs to use https:// 2020-03-12 00:32:44 -04:00
b961aa0542 update lammps.sandia.gov URLs to use https:// 2020-03-12 00:28:28 -04:00
6dd9a507ef update PyMol URLs 2020-03-12 00:21:20 -04:00
23569e67a0 update Ensight URL 2020-03-12 00:20:59 -04:00
e58aeebcce update URLs for pizza.py homepage 2020-03-12 00:13:58 -04:00
667c9f2a9f update AtomEye related URLs 2020-03-12 00:08:57 -04:00
d0f57289fc finish updating docs for fixes using code-block plus a few other improvements 2020-03-11 12:58:57 -04:00
5029bc9e1e more conversions from parsed-literal to code-block 2020-03-11 10:19:19 -04:00
8546bb51bf Layout images so they show up side-by-side in html and pdf and adapt to screen/paper size 2020-03-11 10:18:48 -04:00
33996d9bac Merge pull request #1923 from akohlmey/collected_small_fixes
Collected small fixes for the next patch
2020-03-10 19:38:40 -04:00
1f4725d652 replace parsed-literal with code-block where appropriate. typeset keywords in cursive 2020-03-10 16:54:04 -04:00
2d329a8b76 typeset symbols in water model howtos 2020-03-10 16:20:52 -04:00
ae9255e057 collapse multiple empty lines into a single empty line 2020-03-10 15:56:11 -04:00
e643e88913 remove trailing whitespace from documentation sources 2020-03-10 15:51:06 -04:00
e9f5b8246a whitespace fixes 2020-03-10 15:18:00 -04:00
5ffc12ffc0 Merge remote-tracking branch 'github/master' into collected_small_fixes 2020-03-10 15:16:07 -04:00
b9ff623c16 Merge pull request #1920 from jguenole/fire-debug
fire bug fix to avoid crashes due to lost atoms
2020-03-10 15:08:58 -04:00
7b7ca000b3 Merge pull request #1922 from weinbe2/snap-scratch
SNAP optimizations - hierarchical parallelism, scratch memory, data layout transformations
2020-03-10 15:07:46 -04:00
9d7b15631d Add contributing author 2020-03-10 09:20:54 -06:00
4e31d622ce Whitespace and comment cleanup 2020-03-10 09:11:29 -06:00
66c019e78b more explicitly describe how force/virial depend on random numbers 2020-03-10 06:43:13 -04:00
d2986b7495 update CMake presets 2020-03-09 11:04:26 -04:00
a0fb7c812c Merge branch 'master' into collected_small_fixes 2020-03-09 10:53:42 -04:00
3be6347ad4 Merge pull request #1924 from akohlmey/rename-user-meso
Rename USER-MESO package to USER-MESODPD
2020-03-09 10:53:22 -04:00
740717d114 add false positives 2020-03-09 10:00:14 -04:00
a6086c279b rename USER-MESO package to USER-MESODPD and update related files and folders 2020-03-09 09:48:49 -04:00
536e7a969a silence compiler warning and provide extra comment about optimization 2020-03-09 09:17:49 -04:00
45902772b7 Merge branch 'minimizer' of github.com:yafshar/lammps into collected_small_fixes 2020-03-09 09:15:40 -04:00
475b7dc4f4 provide access to number of local data rows for fixes 2020-03-07 10:58:35 -05:00
6f1d913e7e simplify library interface code to extract peratom or local data from computes 2020-03-07 10:57:51 -05:00