Commit Graph

34192 Commits

Author SHA1 Message Date
52b84c9776 use_qscaled must be initialized in the constructor 2023-01-08 14:07:46 -05:00
f832a7ed46 Merge branch 'develop' into dielectric-updates 2023-01-08 10:52:30 -05:00
32a6b70b01 whitespace 2023-01-08 10:52:23 -05:00
6a8df032b6 Merge pull request #3582 from athomps/sllod_variants
Implement sllod variants
2023-01-06 21:55:10 -05:00
be5cede69f Merge pull request #3551 from akohlmey/compute-efield-atom-wolf
Add new compute efield/wolf/atom command
2023-01-06 20:29:38 -05:00
aee93dbe69 Merge pull request #3571 from akohlmey/lepton-package
LEPTON package using the Lepton library to compute forces from expression strings
2023-01-06 18:41:18 -05:00
fbbe66c8bd Merge branch 'develop' into lepton-package 2023-01-06 17:53:23 -05:00
a218071b2b Merge pull request #3574 from akohlmey/collected-small-changes
Collected small changes and fixes
2023-01-06 16:24:19 -05:00
b2226f9c70 Merge pull request #3588 from srtee/electrode-intel
simplified intel suffix styles in ELECTRODE
2023-01-06 15:33:00 -05:00
7fd9086c65 whitespace 2023-01-06 14:44:18 -05:00
f007eaf946 Merge branch 'develop' into collected-small-changes 2023-01-06 14:41:22 -05:00
9a8455f546 Merge pull request #3577 from bathmatt/kokkos-mliap-pytorch
Have PyTorch interface for MLIAP working in Kokkos.  This uses cuPy a…
2023-01-06 14:24:10 -05:00
ddc8ed8c2d Merge branch 'develop' into collected-small-changes
# Conflicts:
#	src/dump.cpp
2023-01-06 13:09:22 -05:00
f6d8df5706 add unit tests for lepton/coul 2023-01-06 13:07:55 -05:00
3878cfa9b0 Merge pull request #3587 from akohlmey/collected-fixes
Collected fixes subset of pull request #3574
2023-01-06 12:57:19 -05:00
ce1e997de0 do now write out per-type pair cutoff with kspace enabled 2023-01-06 12:12:13 -05:00
af72a957f8 reorder lines, so syntax highlighting does not get messed up 2023-01-06 10:07:05 -05:00
909bbcfdbd a few more tweaks for consistency 2023-01-06 09:03:00 -05:00
92df9f1c71 update docs 2023-01-06 08:43:44 -05:00
523821d83e add extract() function to pair style lepton/coul for kspace compatibility 2023-01-06 08:43:10 -05:00
8813a65fe8 make use of charges in Lepton expressions optional 2023-01-06 08:01:26 -05:00
bf63cccda4 implement pair style lepton/coul and lepton/coul/omp 2023-01-06 07:27:28 -05:00
e460c3b6d5 improve error messages 2023-01-06 01:08:15 -05:00
da9e117e47 remove bogus comment 2023-01-06 01:05:39 -05:00
3f496905d6 Merge branch 'develop' into lepton-package 2023-01-06 00:44:28 -05:00
69169031ba spelling 2023-01-06 00:00:24 -05:00
289d319a6c drop a few more command prompt characters 2023-01-06 00:00:14 -05:00
8dc7a37ba0 register KOKKOS acceleration for pair style 2023-01-05 23:59:32 -05:00
84b8f3caa0 remove bogus "extract" data from angle style amoeba test 2023-01-05 23:43:19 -05:00
01d9033e2d Merge branch 'develop' into collected-small-changes 2023-01-05 23:36:45 -05:00
8beb718b37 require a minimum of 2 values for writing tables 2023-01-05 23:28:20 -05:00
66fff95455 add unit tests for fix deform and fix nvt with options 2023-01-05 23:01:52 -05:00
2ee523bcfd update unit tests for bugfix in dihedral style table 2023-01-05 23:01:45 -05:00
a3d8cca25b add unit test for the extract method of angle styles 2023-01-05 23:01:09 -05:00
32347792ad follow the usual convention and call dihedral angle phi 2023-01-05 23:00:33 -05:00
6ccdc8df4f include force function in angle table example to show the need for correct unit conversion (force is energy per radian squared) 2023-01-05 23:00:27 -05:00
e05104a45e fix copy-n-paste issue 2023-01-05 22:59:29 -05:00
cd54c41276 programming style 2023-01-05 22:58:16 -05:00
8d9a4d86ba flag member functions without side effect as const 2023-01-05 22:56:30 -05:00
f2e3b22222 make created tables better suitable for human consumption 2023-01-05 22:56:08 -05:00
0df140876c fix subtle bug in stress tally for dihedral style table 2023-01-05 22:54:27 -05:00
e82eb9ecc4 remove some legacy code and update for more recent code changes 2023-01-05 22:53:42 -05:00
ee48231bd6 improve error messages 2023-01-05 22:52:51 -05:00
e48e5ad965 update suffix handling to be consistent (also with pending fix pair changes) 2023-01-05 22:51:49 -05:00
73300b080b rephrase as requested by @sjplimp 2023-01-05 22:47:50 -05:00
3e053adfbe Print warning about unsorted custom dumps without atom IDs. Explain in manual. 2023-01-05 22:44:32 -05:00
56cb967991 enforce consisten eigenvector signs for ML-POD parameter coefficients
This also updates the bundled coeffs file and reference outputs.
2023-01-05 22:43:53 -05:00
ef10719476 add logic to rerun command to trigger dumps on expected steps or time 2023-01-05 22:43:40 -05:00
3bf527d070 Merge pull request #3579 from akohlmey/linalg-in-cpp
Convert linalg library from Fortran to C++
2023-01-05 21:16:06 -05:00
843cc98531 Merge pull request #3569 from jrgissing/type-labels-bond/react-examples
Type labels for bond/react examples
2023-01-05 19:22:43 -05:00