Commit Graph

39188 Commits

Author SHA1 Message Date
65f2767d9d Merge pull request #4169 from ohenrich/cg-dna
CG-DNA: Real units and potential reader
2024-06-20 16:25:16 -04:00
734fdf4a46 rename CG-DNA potential files 2024-06-20 14:33:26 -04:00
00d7aa935f follow LAMMPS programming style more closely, silence compiler warnings 2024-06-20 09:39:21 -04:00
001ac67b3b apply clang-format 2024-06-20 09:23:32 -04:00
c8dc135b8f update according to "include-what-you-use" principles 2024-06-20 09:22:32 -04:00
9c8c04a7b4 Merge branch 'develop' into cg-dna 2024-06-20 02:44:29 -04:00
71c5e04121 Merge pull request #4179 from akohlmey/collected-small-changes
Collected small changes and fixes
2024-06-19 17:39:57 -04:00
cb0af02748 Merge pull request #4193 from akohlmey/extra-command-package
Create new EXTRA-COMMAND package
2024-06-19 15:06:20 -04:00
ddec24308c small docs and spelling corrections and updates 2024-06-19 15:04:14 -04:00
778d11c79e Merge remote-tracking branch 'github/develop' into collected-small-changes 2024-06-19 14:46:04 -04:00
80556214e4 remove unused class member 2024-06-19 13:57:10 -04:00
629a9cbe3d Merge pull request #4188 from Eddy-Barraud/dpd_charged
add pair styles dpd/coul/slater/long and dpd/coul/slater/long/gpu
2024-06-19 13:50:46 -04:00
c4f5605518 Merge pull request #4197 from rbberger/library_interface_update
library: add comm->procgrid to extract_global
2024-06-19 12:04:07 -04:00
9b419b669d Merge pull request #4192 from gtribello/fix-plumed-cmake
Update to Plumed interface
2024-06-19 12:03:43 -04:00
ef902b03f9 Merge branch 'develop' into collected-small-changes 2024-06-19 12:02:56 -04:00
4e0bf6137d Merge pull request #4110 from uf3/ml-uf3
Implementation of pair_style uf3 and uf3/kk
2024-06-19 11:43:32 -04:00
45508baee5 major refactor for restart, data file handling. removal of dead code. 2024-06-19 11:09:56 -04:00
6ada6b7bf2 update example for dpd/coul/slater/long 2024-06-19 11:00:21 -04:00
0aff26705c correct force style input 2024-06-19 10:40:19 -04:00
37572225f4 Merge pull request #4191 from akohlmey/pair-hybrid-molecule
Add new pair style hybrid/molecular
2024-06-19 00:49:37 -04:00
83a024b26b add force style test 2024-06-18 21:41:34 -04:00
71b38521c5 reformat and remove duplicate NP_MULTI_OLD flags 2024-06-18 21:21:20 -04:00
2a132dfe8f add tests for PyLammps to check new exports 2024-06-18 21:13:33 -04:00
19a8313578 switch proc_grid to procgrid with backward compatibility for PyLammps 2024-06-18 21:13:14 -04:00
b9f8a5b811 Merge pull request #4184 from stanmoore1/pair_soft_kk
Add Kokkos version of `pair_style` soft
2024-06-18 20:52:34 -04:00
d54f38ff62 whitespace 2024-06-18 20:46:32 -04:00
740b206e7f Tightened up the definitions of deltamu's and conc's 2024-06-18 11:04:47 -06:00
43cc8696dd mention that verlet/split is not available for TIP4P 2024-06-18 08:46:18 -04:00
41227e0e93 apply param per type check only on atom types in fix group 2024-06-18 08:35:18 -04:00
3d1f933e21 port QEq parameter check from fix qeq/reaxff to fix qeq/shielded 2024-06-18 07:05:29 -04:00
5e72dc0d6b error out when extracting non-existent QEq paramters from ReaxFF, e.g. when using pair style hybrid 2024-06-18 06:59:12 -04:00
88ccaeddc1 always return initialized data when extracting per-type info 2024-06-18 06:58:26 -04:00
ab800b4e26 skip over groups with whitepsace in their name so we don't create illegal index files 2024-06-17 17:23:05 -04:00
c867bb3e28 enable and apply clang-format 2024-06-17 17:00:00 -04:00
9856ef7d81 better error handling when processing index files with illegal group names 2024-06-17 16:57:22 -04:00
318b43f358 update group2ndx/ndx2group docs 2024-06-17 15:02:43 -04:00
f4005e350a update fix plumed API version check and add reminder comments to build files 2024-06-17 07:11:56 -04:00
4be1b41aef class n func rename 2024-06-17 10:03:06 +02:00
d8c88c70ea Merge pull request #4189 from evoyiatzis/patch-2
Update fep.py
2024-06-16 01:27:42 -04:00
7704227bfb Merge pull request #4195 from jtclemm/small-patches
Various small patches for GRANULAR and BPM packages
2024-06-16 01:26:01 -04:00
59fb8a6835 avoid segfault trying to delete non-copied style 2024-06-15 14:08:14 -04:00
d2ea3b1ac5 add some tests for new features 2024-06-15 08:28:52 -04:00
ee0dd80cbe fix another typo 2024-06-15 06:17:13 -04:00
9b52f66a5a fix typos 2024-06-15 05:55:45 -04:00
cb3aa07287 update PyLammps to use added properties directly instead of parsing them. 2024-06-14 20:21:19 -04:00
1ce94e47d8 also make "comm->ghost_velocity" accessible 2024-06-14 20:20:53 -04:00
77b610a2bd also make comm->style, comm->layout, and comm->mode accessible through the library interface 2024-06-14 20:04:21 -04:00
514039ed62 library: add comm->procgrid to extract_global 2024-06-14 08:10:24 -06:00
a4ac48addf add example file and author contrib 2024-06-14 10:13:48 +02:00
03251e823f add terminal newline 2024-06-13 15:20:12 -04:00