Commit Graph

19805 Commits

Author SHA1 Message Date
1827ce1d32 update dynamical_matrix docs 2020-02-03 09:01:31 -05:00
73364404a1 Step version strings for next patch release 2020-02-03 07:18:31 -05:00
ecf30b47a0 Convert and revise a few more files (minimize, neb, tricilinic) 2020-02-02 22:35:39 -05:00
fde2a59b0e update documentation for contributing files and building the manual to using rst files 2020-02-02 19:05:35 -05:00
5b557ca4c8 remove references to .txt files for building the documentation 2020-02-02 18:50:49 -05:00
8ef3d77724 Convert documentation of improper styles from images to mathjax 2020-02-02 18:22:40 -05:00
949f88eb65 Convert documentation of dihedral styles from images to mathjax 2020-02-02 17:22:54 -05:00
bbf229e8cc Merge pull request #1866 from YunxingZuo/master
add SNAP and quadratic SNAP potentials for six elemental systems
2020-02-02 06:55:09 -05:00
0a10f5567a correct potential file format to be compatible with latest lammps 2020-01-31 21:04:03 -08:00
01a6608fb6 add SNAP and quadratic SNAP potentials for six elemental systems 2020-01-31 19:30:02 -08:00
2b6a022309 Merge branch 'master' into fft-consistency 2020-01-31 20:51:58 -05:00
dd91d519e1 Merge pull request #1703 from jboschen/nwchem
add NWChem wrapper to client/server mode for AIMD
2020-01-31 20:50:51 -05:00
5983c2a87d Merge pull request #1864 from akohlmey/doc-remove-redundant-links
More documentation ReStructuredText cleanup
2020-01-31 17:32:51 -05:00
472fe8216f address spelling errors 2020-01-31 16:54:27 -05:00
b66717d8cb add one more missing link 2020-01-31 16:40:41 -05:00
a9a2a9fef9 provide updated information on how to report bugs on github or via e-mail 2020-01-31 16:39:34 -05:00
f386598c54 restore missing links 2020-01-31 16:39:09 -05:00
1a4e6228a2 add false positive 2020-01-31 15:59:26 -05:00
21a80e9b50 fix typo 2020-01-31 15:57:52 -05:00
8fd2ab78f1 Merge branch 'master' into nwchem
# Conflicts:
#	doc/src/Howto_client_server.rst
#	doc/src/server_md.txt
2020-01-31 15:56:25 -05:00
97addd2bee Merge branch 'master' into doc-remove-redundant-links
# Conflicts:
#	doc/src/min_modify.rst
#	doc/src/min_style.rst
#	doc/src/minimize.rst
2020-01-31 15:39:25 -05:00
947827fe1f Merge pull request #1052 from jguenole/adaptglok
Optimized implementation of FIRE
2020-01-31 15:24:00 -05:00
0f37e641eb restore one global definition of previously removed links, that are still in use 2020-01-31 14:09:12 -05:00
3169ef772b delete superfluous horizontal line plus preceding empty lines at the end of doc files 2020-01-31 14:06:14 -05:00
cdf2f66c0a delete empty lines at the end of files 2020-01-31 14:03:52 -05:00
ce10fd01a8 remove redundant/obsolete link definitions 2020-01-31 14:00:53 -05:00
b524db88a3 Merge remote-tracking branch 'github/master' into adaptglok
# Conflicts:
#	doc/src/min_modify.rst
2020-01-31 12:24:59 -05:00
56ff70de70 Merge pull request #1860 from akohlmey/collected-small-changes
Collected small changes for next patch release
2020-01-31 12:21:17 -05:00
39188da85b Merge pull request #1857 from ohenrich/user-cgdna
USER-CGDNA: Increased tolerance for fatal error in FENE bond
2020-01-31 12:20:57 -05:00
710929da1d Merge pull request #1861 from akohlmey/doc-link-escape-removal
Documentation link formatting cleanup and fixup
2020-01-31 11:00:27 -05:00
6424883daf apply revisions suggested by @sjplimp 2020-01-31 10:52:31 -05:00
82aab36898 reset array size since we don't use the last element anymore 2020-01-31 09:59:35 -05:00
2069c7a5fd correct incorrect bugfix 2020-01-31 09:58:04 -05:00
31c4833707 correct out-of-bounds array access in RanMars::select_subset() 2020-01-31 09:51:23 -05:00
ed628a2de7 remove some more unneeded backslash escapes and fix up a few more doc links 2020-01-31 09:01:26 -05:00
82286702cb switch OpenMP pragma to default(shared), so it is compatible with all OpenMP standard versions 2020-01-31 08:32:14 -05:00
bc3807aa4b Fix sign of forces in AO mode, update h2o examples 2020-01-31 00:42:00 -06:00
e4cf0a07a0 remove more \_ escapes from doc anchors and a bunch of other issues found in the process 2020-01-31 00:45:13 -05:00
bb94303e73 remove backslash escapes from link anchors 2020-01-30 17:04:09 -05:00
c732ccc0f8 remove trailing whitespace 2020-01-30 17:02:06 -05:00
f872d374a0 Merge branch 'adaptglok' of github.com:jguenole/lammps into adaptglok 2020-01-30 17:00:10 -05:00
6369ab230e make inclusion guard defines consistent with LAMMPS and avoid redefinition of MAX() 2020-01-30 16:56:02 -05:00
9fade740fb Fix issue with Kokkos FFT_CUFFT 2020-01-30 13:27:36 -07:00
a50563d582 Fix issue with Kokkos FFTW3 2020-01-30 13:03:15 -07:00
4ea9dea19c More Kokkos FFT refactor 2020-01-30 12:04:57 -07:00
292fc77dce correct broken links to commands 2020-01-30 12:55:59 -05:00
eb7958d04c update documentation for pair_modify to reflect code changes and clarify the use of special 2020-01-30 12:55:25 -05:00
ef30d0ed7b Add missing endif 2020-01-29 17:32:25 -07:00
f8e2543c44 Move FFT data types out of kokkos_type.h 2020-01-29 17:15:47 -07:00
1851a9f7d4 Refactor Kokkos FFT_DATA 2020-01-29 16:21:33 -07:00