Commit Graph

24792 Commits

Author SHA1 Message Date
6e11dee2f1 Merge branch 'master' into citation-refactor
# Conflicts:
#	doc/src/fix_bond_react.rst
2021-02-05 13:42:23 -05:00
5d75ae98a8 Merge pull request #2583 from akohlmey/replace-strstr-w-strmatch
Simplify some internal string processing
2021-02-05 13:34:24 -05:00
1da995d2e3 Merge pull request #2580 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2021-02-05 10:32:07 -05:00
cf140e7893 another case where using utils::strdup() reduces code massively. 2021-02-04 18:19:57 -05:00
8d68623b35 silence compiler warnings with IBM XL compilers 2021-02-04 18:08:41 -05:00
cf427bcad8 apply utils::strdup() in a few more cases 2021-02-04 17:52:32 -05:00
5c8bbb42f6 replace variable name "string" with "text" to avoid confusion with std::string 2021-02-04 17:33:54 -05:00
24bf1e5b0c make use of utils::strdup() 2021-02-04 17:33:02 -05:00
ab697be9e7 simplify using fmtlib 2021-02-04 17:00:27 -05:00
0f07215a2b add utils::strdup() convenience function 2021-02-04 17:00:02 -05:00
f5bf10e00f remove dead code 2021-02-04 15:34:56 -05:00
4e791ac4f7 replace 'strstr(xxx,"x_") == xxx' with utils::strmatch("^x_") 2021-02-04 15:20:43 -05:00
11b2a1e1ac reorder package names to be in 2 groups (non-user, user) and each sorted alphabetically 2021-02-04 14:58:49 -05:00
3e07711739 simplify using C++11 syntax 2021-02-04 14:35:39 -05:00
dadea34663 reformat comment 2021-02-04 14:35:39 -05:00
5e29cba076 replace Get_Time() with MPI_Wtime() 2021-02-04 14:35:39 -05:00
95e2214d96 more typecasts to double to avoid 32-bit int overflows when computing memory usage 2021-02-04 14:35:38 -05:00
49ea762300 Merge pull request #2571 from akohlmey/arg-info-class
Add ArgInfo class for simpler processing of compute, fix, and variable references
2021-02-04 14:32:34 -05:00
96f67ebeaa Merge pull request #2582 from ellio167/pair_kim_refactor
Small pair kim refactor to better support multiple run commands with different models
2021-02-04 13:27:06 -05:00
5256631bee test for correctly supporting the use of multiple calls to pair_style kim 2021-02-04 11:28:38 -06:00
302be3f946 Fix typo 2021-02-04 10:09:14 -06:00
8da3bc9144 Increment instance_me in pair_kim to ensure neighbor correct list updates 2021-02-04 09:47:29 -06:00
c9cf8b57f4 Fix behavor of a 2nd call to 'pair_style kim ...' & a bug for parameter changes 2021-02-04 09:45:08 -06:00
8574a417fb Merge pull request #2579 from lammps/fix-ti-spring-doc
Clarify one of the outputs of fix ti/spring
2021-02-04 05:50:35 -05:00
c6c9c82f96 ID strings are immutable, so make them const char * arguments 2021-02-03 21:13:54 -05:00
9f7dc78f86 convert a few more styles to use ArgInfo 2021-02-03 21:06:23 -05:00
9fa1688f39 small corrections for dump custom 2021-02-03 21:06:04 -05:00
04a46bfd99 Merge remote-tracking branch 'github/master' into arg-info-class 2021-02-03 17:43:49 -05:00
4b15ffcf14 more use of ArgInfo class 2021-02-03 17:43:39 -05:00
91d913b7ee Merge pull request #2576 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2021-02-03 17:08:04 -05:00
1ee27e2bc2 clarify one of the outputs of fix ti/spring 2021-02-03 15:01:35 -07:00
a700e506ae use utils::strmatch(name,"^x_") instead of (strstr(name,"x_") == name) 2021-02-03 16:50:19 -05:00
2f7d6672df more files with ArgInfo support added 2021-02-03 16:39:01 -05:00
f745d5d7be continue adding ArgInfo support 2021-02-03 10:52:16 -05:00
4eb143bfee fix another border communication issue in KOKKOS version of atom style dpd 2021-02-02 17:27:29 -05:00
e2e6639013 add typecast to avoid (unlikely but possible) integer overflows.
this will silence a lot of static code analysis warnings
2021-02-02 17:27:04 -05:00
5196926c28 remove meaningless typecast 2021-02-02 14:36:37 -05:00
1da3ba87f4 use -mpicolor flag as documented (and not -mpi). closes #2575 2021-02-02 14:12:46 -05:00
4404469f5c run GitHub actions only on merges/pushes to master to save minutes 2021-02-02 11:38:24 -05:00
85539765d0 update docs about thermo_modify flush 2021-02-02 11:37:08 -05:00
c2c8c5e493 Merge remote-tracking branch 'github/master' into arg-info-class
# Conflicts:
#	src/compute_chunk_atom.cpp
#	src/compute_chunk_spread_atom.cpp
#	src/compute_reduce.cpp
#	src/compute_reduce_region.cpp
#	src/compute_slice.cpp
#	src/fix_ave_atom.cpp
2021-02-02 11:33:01 -05:00
4d98d9f6aa add arginfo to fix saed/vtk 2021-02-02 11:29:08 -05:00
f2479e7d05 Merge pull request #2401 from lammps/configure-github-actions
Enable CodeQL static analysis and integration and unit tests on MacOS via GitHub actions
2021-02-02 10:27:25 -05:00
bfe64629fd switch to do CodeQL analysis and Unittest on MacOS. currently for PRs and master 2021-02-01 20:32:24 -05:00
6d836d8f30 run documentation actions in parallel 2021-02-01 20:32:24 -05:00
a83fe46860 spelling target needs conf.py 2021-02-01 20:32:19 -05:00
88e182da64 speed up compilation for static code analysis by switching to debug build type and turning off optimization 2021-02-01 20:31:37 -05:00
b15555724d combine analysis and simplify 2021-02-01 20:31:37 -05:00
0be1a419c7 split codeql workflow into two files as no compilation is needed for python 2021-02-01 20:31:37 -05:00
60a11b9ea1 do parallel compilation 2021-02-01 20:31:36 -05:00