Commit Graph

6176 Commits

Author SHA1 Message Date
cf64ba4059 whitespace cleanup 2020-03-09 16:31:53 -04:00
69a206f720 add diskfree check to fix halt 2020-03-09 16:23:20 -04:00
072ce8947b list errors and warnings from fix halt 2020-03-09 16:23:02 -04:00
740717d114 add false positives 2020-03-09 10:00:14 -04:00
a6086c279b rename USER-MESO package to USER-MESODPD and update related files and folders 2020-03-09 09:48:49 -04:00
21f2ec3a25 Merge branch 'master' into bond/react-new-examples-and-package 2020-03-05 20:08:19 -07:00
1fb54c307c Merge pull request #1918 from akohlmey/collected-small-fixes
Collected small fixes for the next patch
2020-03-05 15:16:50 -05:00
54a37aa4ef fix spelling issue 2020-03-05 14:43:22 -05:00
fb3a8f5bb1 Merge pull request #1909 from giacomofiorin/colvars-update
Update Colvars to version 2020-02-27
2020-03-05 10:18:01 -05:00
6786efa224 Merge commit 'refs/pull/1916/head' of github.com:lammps/lammps into collected-small-fixes 2020-03-04 17:04:45 -05:00
14d17b3513 clean the superfluous newline
I believe this newline in the document is superfluous.
2020-03-04 16:41:27 -05:00
7bbf070757 document new C++ and CMake requirements in manual 2020-03-04 14:37:51 -05:00
e9544218e6 some corrections to the building the manual documentation 2020-03-04 14:14:12 -05:00
3eeb7547b5 step version string for next patch and stable version 2020-03-03 07:25:18 -05:00
7d598ba8d7 synchronize list of hardware architectures supported by KOKKOS with list in cmake file 2020-03-03 03:33:23 -05:00
a4a5d24a69 add link to github support for subversion clients 2020-03-03 03:19:25 -05:00
8f608f6a35 lo-level -> low-level 2020-03-01 10:30:06 -05:00
ff614957c6 encode some more mathematical expressions and symbols 2020-03-01 09:25:20 -05:00
2455e35fd8 typeset mixing rules with embedded math 2020-03-01 08:51:29 -05:00
8662733dcd convert the remainder of raw html typesetting in pair style smtbq 2020-02-29 14:45:39 -05:00
228a0bfa2e replace hi- with high- 2020-02-29 11:37:47 -05:00
6f47f110f1 use k_B consistently, fix some more math. convert some transcriptions to math 2020-02-29 11:37:31 -05:00
07fc624509 typeset reduced units 2020-02-29 06:41:28 -05:00
66a0e27edf some more cases where we can use embedded math 2020-02-29 04:57:44 -05:00
e6c9efe6bf convert lists to tables for more compact presentation 2020-02-28 18:52:13 +01:00
f02b2485fa tweak command overview table width so it is readable in PDF 2020-02-28 18:51:52 +01:00
71c11c32e3 replace more raw html code and add syntax highlighting 2020-02-28 18:00:43 +01:00
19d334908b replace raw html with embedded math expressions and fix related issues 2020-02-28 17:39:57 +01:00
7be004512f Update Colvars to version 2020-02-27
This update contains several small new features or usability improvements.
    Descriptions and authorship information can be accessed from the pull
    requests listed below.

    Allow setting sigma parameter directly for metadynamics
    https://github.com/Colvars/colvars/pull/325

    Remove default values for lowerWall and upperWall legacy keywords
    https://github.com/Colvars/colvars/pull/324

    biasActualColvar option to bypass extended-Lagragian for a bias
    https://github.com/Colvars/colvars/pull/321

    Flexible restart-reading
    https://github.com/Colvars/colvars/pull/320
2020-02-27 19:55:31 -05:00
03985454ed some more formatting and math conversion improvements 2020-02-27 18:18:49 -05:00
d242051c8e Merge pull request #1898 from akohlmey/next_lammps_version
Update version info for next release candidate
2020-02-27 14:38:08 -05:00
6e7e365981 Merge pull request #1888 from lammps/release-preparation
Documentation and Build script and Info updates for stable release
2020-02-27 13:23:08 -05:00
3c277409c2 switch parsed-literal to code-block in Howto files where applicable 2020-02-27 12:45:14 -05:00
06ede499c1 use only the LAMMPS logo in the navigation bar 2020-02-27 11:36:00 -05:00
eb8531062c Merge branch 'doc-updates' of github.com:rbberger/lammps into release-preparation 2020-02-27 11:26:15 -05:00
25ec8d36a8 Final batch of index cleanup and code-blocks 2020-02-27 11:08:04 -05:00
2d2cb46dc0 move release date 2020-02-27 08:58:09 +01:00
1bb38ed09b Merge commit 'refs/pull/1903/head' of github.com:lammps/lammps into release-preparation 2020-02-27 01:15:17 -05:00
fe1ac99ae7 bond/react: docs tweak 2020-02-26 20:08:58 -07:00
9ef5949798 Second batch of index cleanup and code-blocks 2020-02-26 16:31:05 -05:00
3563d2f10d remove references to html-offline and only produce the offline viewable html manual 2020-02-26 16:01:03 -05:00
7bd3215226 Merge pull request #1894 from stanmoore1/kk_snap_chunk
Make Kokkos pair SNAP chunksize variable user-settable
2020-02-26 15:27:37 -05:00
a828facbd8 Merge pull request #1900 from akohlmey/couple-lammps-plugin
Example for loading LAMMPS as a plugin from a shared library
2020-02-26 10:40:24 -05:00
c92378eaca add explanation of use of group2 and document effect of compute group 2020-02-26 13:12:14 +01:00
8e1928aa65 First batch of index cleanup and code-blocks 2020-02-25 14:46:22 -05:00
e87b3a21c2 complete documentation for LAMMPS plugin coupling example 2020-02-25 14:10:55 -05:00
1fc4dc151f typo 2020-02-25 18:11:31 +01:00
7acba4584d added group2ID 2020-02-25 18:05:36 +01:00
1a2a9f2209 small correction/simplification of the linking to LAMMPS library examples 2020-02-25 17:36:37 +01:00
96d04b8a6c Update LAMMPS lexer for docs 2020-02-25 11:30:20 -05:00