Commit Graph

20947 Commits

Author SHA1 Message Date
73e766b933 Remove another unneeded class 2020-05-20 01:30:34 -04:00
50d4cf210c Remove unnecessary classes 2020-05-19 23:37:11 -04:00
c0acb3a438 Remove multiple definitions of STRINGIFY 2020-05-19 23:15:22 -04:00
c04a71a239 add unit test framework for pair, bond, angle styles from progguide branch 2020-05-19 22:24:31 -04:00
1517daeaed add support for extracting r0 array to bond style zero 2020-05-19 21:54:50 -04:00
16ce10aefc the first argument to Bond::extract() should be const char * not char *. 2020-05-19 21:54:31 -04:00
b1ee9ad1fe Merge pull request #2091 from stanmoore1/kk_summit
Rename Kokkos Makefile
2020-05-15 17:39:53 -04:00
d39457e46e Merge pull request #2092 from lammps/omega-angmom
Initialize omega and angmom when reading a data file
2020-05-15 17:20:54 -04:00
f1a9eab5da initialze omega and angmom when read data file 2020-05-15 13:07:34 -06:00
1d52e7f243 Rename Kokkos Makefile 2020-05-15 12:19:16 -06:00
20ad924a54 Merge pull request #2082 from stanmoore1/kk_bigint
Fix 32-bit integer overflow in Kokkos neighlist build on GPUs
2020-05-11 20:55:14 -04:00
040cbe378c Merge pull request #2080 from akohlmey/collected-small-changes
Collected small changes for the next patch release
2020-05-11 20:37:59 -04:00
3d0186987d simplify 2020-05-11 18:31:07 -04:00
a6cfe8f642 update Kokkos related documentation about JIT compilation and UVM. 2020-05-11 18:07:51 -04:00
af1aa03446 Merge pull request #2074 from akohlmey/singularity-update
Updates for singularity definition files
2020-05-11 17:44:14 -04:00
b1ac51f721 Fix 32-bit integer overflow in Kokkos neighlist build 2020-05-11 15:11:24 -06:00
23c55b0046 fix "use of class after delete" bug 2020-05-11 16:23:04 -04:00
0ab3ebbac0 improve readability 2020-05-11 13:31:47 -04:00
822c7c5ca1 elimitate nthreads member, change threads from int to bool and determine number of threads dynamically
this fixes #2081
2020-05-11 10:57:27 -04:00
8228cc8987 Merge branch 'collected-small-changes' of github.com:akohlmey/lammps into collected-small-changes
# Conflicts:
#	src/atom_vec.cpp
2020-05-10 14:09:31 -04:00
6e53608789 a new communicator should have a different number than the old 2020-05-10 14:08:54 -04:00
4ee5eee7cb don't use C++ style comments in C code 2020-05-10 14:08:06 -04:00
afd769314b define _noopt macro with -D_FORTIFY_SOURCE to be empty to avoid false positives 2020-05-10 14:06:56 -04:00
987bff27d4 fix issues in AtomVec refactoring detected by compiler warnings 2020-05-10 14:05:32 -04:00
873a638cc3 fix issues in AtomVec refactoring detected by compiler warnings 2020-05-09 19:45:28 -04:00
b799e44e5c Merge pull request #2077 from rbberger/cmake-fixes
Fix issue when generating lmpgitversion.h
2020-05-08 16:57:33 -04:00
cbd4ce5130 Use absolute path to LAMMPS_DIR for collecting git info 2020-05-08 16:04:55 -04:00
06737ce7a7 Merge pull request #1788 from lammps/atomvec-custom
Refactoring of AtomVec class
2020-05-08 15:18:11 -04:00
6b7e0df7f2 Merge pull request #2073 from ndtrung81/gpu-triclinic
GPU package pair styles to support neighbor list builds on the GPU with triclinic boxes
2020-05-08 14:29:55 -04:00
366d3fe249 update .gitignore and Purge.list 2020-05-08 14:09:59 -04:00
9004b47251 remove trailing whitespace 2020-05-08 01:33:16 -04:00
eefeaf4d25 make OpenMPI only use shared memory comm by default and silence some warnings 2020-05-07 18:15:57 -04:00
18c77db8c3 Add Kokkos vel methods 2020-05-07 15:16:17 -06:00
095801e1d6 Merge pull request #2071 from wmbrownIntel/wmb_mf_cleanup
Partial Cleanup of Conventional Build Makefiles.
2020-05-07 17:02:28 -04:00
d7650e8e02 no need to include googletest libs, we download and compile internally 2020-05-07 17:02:04 -04:00
5db1e4fe8d Initialize variables since Kokkos doesn't call setup_fields 2020-05-07 13:19:12 -06:00
3b77546eb9 Merge pull request #2069 from junghans/latte_v1.2.2
latte: bump to v1.2.2
2020-05-07 14:27:19 -04:00
5fa7e138ea Merge pull request #2070 from junghans/kokkos_v3.1.01
cmake: bump kokkos to v3.1.01
2020-05-07 14:16:56 -04:00
d69009ac45 Fix pointer delete issue with Kokkos package 2020-05-07 11:10:09 -06:00
cc18177153 Whitespace cleanup 2020-05-07 10:46:32 -06:00
3a23a97f64 Merge branch 'atomvec-custom' of github.com:lammps/lammps into atomvec-custom 2020-05-07 10:42:50 -06:00
71149768c6 fix atom_vec_hybrid bug 2020-05-07 10:42:40 -06:00
2b9a1a6982 Fix Kokkos runtime issue with special bonds 2020-05-07 10:35:08 -06:00
69a6a8e064 pull in kokkos-3.1.01 2020-05-07 10:22:42 -06:00
8ed5829d32 Merge branch 'atomvec-custom' of github.com:lammps/lammps into atomvec-custom 2020-05-06 16:25:22 -06:00
25632992f4 updates to USER-SPH example scripts 2020-05-06 16:25:07 -06:00
8301c7a9c6 Merge branch 'master' of ssh://github.com/lammps/lammps into atomvec-custom 2020-05-06 15:53:21 -06:00
7d9091cacc Add back in old hybrid functions, needed by Kokkos package 2020-05-06 15:49:44 -06:00
9e7765064c Merge branch 'atomvec-custom' of github.com:lammps/lammps into atomvec-custom 2020-05-06 15:28:41 -06:00
1225f7d1e0 small changes to examples scripts for regression purposes 2020-05-06 15:28:27 -06:00